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The map label for this gene is ydgJ [C]

Identifier: 99080406

GI number: 99080406

Start: 602298

End: 603287

Strand: Direct

Name: ydgJ [C]

Synonym: TM1040_0565

Alternate gene names: 99080406

Gene position: 602298-603287 (Clockwise)

Preceding gene: 99080404

Following gene: 99080407

Centisome position: 18.82

GC content: 59.39

Gene sequence:

>990_bases
ATGACACAACCTATTCGTTGGGGCATTCTGGGAGCCGCGAAATTCGCGCGCGAGCATATGGGGCCAGCCATTCACGCTGC
AAACGGTGCTGAACTTGCCGCTCTGGCCACCTCAAGCGCGGACAAAGCTGCGCCATTTCAATCCTTTGCACCCGGAATAG
CAGTGCATGAAAGCTATGAGGCGTTGCTCGCCGACCCGTTGATCGATGCGGTTTACATCCCGCTTCCAAACCATCTCCAT
GTGGAGTGGGCGCTGAAGGCAATGCAGGCGGGCAAACATGTGCTGGTCGAAAAACCCGCGACGCTACGCGAGGAGGAGTT
CGACCAGTTGATTGCGGCGCGGGATGCGGCGGGTGTTCTTGCAGCCGAAGCCTATATGATCGTGCACCACCCGCAATGGC
AGCGCGCGCGCGAACTTGTGCATACCGGTGCGCTGGGGCAGGTGAAGCATGTCTCGGGGAAGTTCTCTTTTGACAATCGC
AGAGACGTCGACAACATCCGCAATCGTCCGGAAACAGGGGGCGGCGCCCTGCGCGACATTGGAGTCTATGTCTTGGGATC
GGCACGCTTTGTCACCGGTGAGGAGCCGCAGGACATCAGTGCGCAGATTGAATGGGAAAACGGGGTGGATGTGCTCTCTA
ATGTGCAGGCGCGGTTCCCGAGCTTTCTTTATACGGCCTATGTCAGCACCCGTTTGCAGCCCTTTCAGGAGATGGTGTTT
CACGGCGACAAAGGTGTATTGCGCCTCACAGCGCCCTTTAATCCGCGGGTCTTTGGGGAGGCACGGCTGGAGTTGCACCA
GGCCTCCCATGCGGCGGGATCGGGACGCGTCATCGAGGAACGCTTCCCCATTGCCGATCACTATAAGCTGCAGGTTGAGG
CCTTCGGAAAGAGTGTGCGCGATGGCACGCCCTATGCCTGCCCGCTAGAGTTCTCGCGCGGGACGCAACGCGCGCTGGAT
CAGATTTTTGCCTGCGCCACCACGCTCTGA

Upstream 100 bases:

>100_bases
TCTCGCGCCTCGCGCCACGGCATCGAGATGTTTGCGGTGGTGACATTCTCTAGCTAGTGTGAGCGCAAACATTCGCGCCG
AGGTCAGGGGAGATTGGCAC

Downstream 100 bases:

>100_bases
AGGTCGATAGCGGGGGGCAGGGGCATCAGGCCGTGCGCCTTGACGGCATGGGGTCGAAAGCGAGCGCGCTTGCAACCCTG
CCCATGGCGGGCGTAGCATC

Product: oxidoreductase-like

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTQPIRWGILGAAKFAREHMGPAIHAANGAELAALATSSADKAAPFQSFAPGIAVHESYEALLADPLIDAVYIPLPNHLH
VEWALKAMQAGKHVLVEKPATLREEEFDQLIAARDAAGVLAAEAYMIVHHPQWQRARELVHTGALGQVKHVSGKFSFDNR
RDVDNIRNRPETGGGALRDIGVYVLGSARFVTGEEPQDISAQIEWENGVDVLSNVQARFPSFLYTAYVSTRLQPFQEMVF
HGDKGVLRLTAPFNPRVFGEARLELHQASHAAGSGRVIEERFPIADHYKLQVEAFGKSVRDGTPYACPLEFSRGTQRALD
QIFACATTL

Sequences:

>Translated_329_residues
MTQPIRWGILGAAKFAREHMGPAIHAANGAELAALATSSADKAAPFQSFAPGIAVHESYEALLADPLIDAVYIPLPNHLH
VEWALKAMQAGKHVLVEKPATLREEEFDQLIAARDAAGVLAAEAYMIVHHPQWQRARELVHTGALGQVKHVSGKFSFDNR
RDVDNIRNRPETGGGALRDIGVYVLGSARFVTGEEPQDISAQIEWENGVDVLSNVQARFPSFLYTAYVSTRLQPFQEMVF
HGDKGVLRLTAPFNPRVFGEARLELHQASHAAGSGRVIEERFPIADHYKLQVEAFGKSVRDGTPYACPLEFSRGTQRALD
QIFACATTL
>Mature_328_residues
TQPIRWGILGAAKFAREHMGPAIHAANGAELAALATSSADKAAPFQSFAPGIAVHESYEALLADPLIDAVYIPLPNHLHV
EWALKAMQAGKHVLVEKPATLREEEFDQLIAARDAAGVLAAEAYMIVHHPQWQRARELVHTGALGQVKHVSGKFSFDNRR
DVDNIRNRPETGGGALRDIGVYVLGSARFVTGEEPQDISAQIEWENGVDVLSNVQARFPSFLYTAYVSTRLQPFQEMVFH
GDKGVLRLTAPFNPRVFGEARLELHQASHAAGSGRVIEERFPIADHYKLQVEAFGKSVRDGTPYACPLEFSRGTQRALDQ
IFACATTL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=253, Percent_Identity=25.6916996047431, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI87081947, Length=197, Percent_Identity=27.9187817258883, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787574, Length=199, Percent_Identity=29.6482412060301, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI87082405, Length=144, Percent_Identity=28.4722222222222, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI145693182, Length=215, Percent_Identity=30.2325581395349, Blast_Score=65, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24581117, Length=203, Percent_Identity=32.512315270936, Blast_Score=102, Evalue=5e-22,
Organism=Drosophila melanogaster, GI24581115, Length=199, Percent_Identity=27.6381909547739, Blast_Score=66, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 36110; Mature: 35979

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPIRWGILGAAKFAREHMGPAIHAANGAELAALATSSADKAAPFQSFAPGIAVHESYE
CCCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCCCHHHHCCCCEEHHHHH
ALLADPLIDAVYIPLPNHLHVEWALKAMQAGKHVLVEKPATLREEEFDQLIAARDAAGVL
HHHHHHHHCEEEECCCCCEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
AAEAYMIVHHPQWQRARELVHTGALGQVKHVSGKFSFDNRRDVDNIRNRPETGGGALRDI
HEEEEEEEECCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCHHHHE
GVYVLGSARFVTGEEPQDISAQIEWENGVDVLSNVQARFPSFLYTAYVSTRLQPFQEMVF
EEEEEECEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGDKGVLRLTAPFNPRVFGEARLELHQASHAAGSGRVIEERFPIADHYKLQVEAFGKSVR
CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEHHCCCCCCCEEEEEEHHCCHHC
DGTPYACPLEFSRGTQRALDQIFACATTL
CCCCEEEECHHCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TQPIRWGILGAAKFAREHMGPAIHAANGAELAALATSSADKAAPFQSFAPGIAVHESYE
CCCCCHHHHHHHHHHHHHCCCEEECCCCCEEEEEECCCCCCCCCHHHHCCCCEEHHHHH
ALLADPLIDAVYIPLPNHLHVEWALKAMQAGKHVLVEKPATLREEEFDQLIAARDAAGVL
HHHHHHHHCEEEECCCCCEEHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHH
AAEAYMIVHHPQWQRARELVHTGALGQVKHVSGKFSFDNRRDVDNIRNRPETGGGALRDI
HEEEEEEEECCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCCCHHHHE
GVYVLGSARFVTGEEPQDISAQIEWENGVDVLSNVQARFPSFLYTAYVSTRLQPFQEMVF
EEEEEECEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HGDKGVLRLTAPFNPRVFGEARLELHQASHAAGSGRVIEERFPIADHYKLQVEAFGKSVR
CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEHHCCCCCCCEEEEEEHHCCHHC
DGTPYACPLEFSRGTQRALDQIFACATTL
CCCCEEEECHHCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7845353 [H]