Click here to switch to the map view.

The map label for this gene is ybiI [H]

Identifier: 99080407

GI number: 99080407

Start: 603420

End: 603689

Strand: Direct

Name: ybiI [H]

Synonym: TM1040_0566

Alternate gene names: 99080407

Gene position: 603420-603689 (Clockwise)

Preceding gene: 99080406

Following gene: 99080413

Centisome position: 18.85

GC content: 61.11

Gene sequence:

>270_bases
ATGGCTGGGGGATGGGCAAAAGACGGCGCGGTAAGCGAACAGATCGAGGCTTCGATCTCGGACGAACTGGCACGTATGAA
TGCACGCCGTGCGCCAGCGGGTGAAAGCCTGACCCATTGTGCTGATTGCGAAGAGGAAATCCCCGAGGCACGGCGCTTGG
CCATCCCCGGTGTGAAACTCTGTATCGACTGCCAAGAGGAGCGCGACGGTGTGCAGCGTCAGCGCGGCGGCATCAATCGT
CGCGGCAGCAAAGACAGCCAGCTCAAGTGA

Upstream 100 bases:

>100_bases
GTGCGCCTTGACGGCATGGGGTCGAAAGCGAGCGCGCTTGCAACCCTGCCCATGGCGGGCGTAGCATCTTCCTTCGAGCT
GAGTGTGACAGGAGCAATGC

Downstream 100 bases:

>100_bases
GCCTCAGTCAAAGAGCGGCAAGCGCATCACATGTTGCGGCCCAGCGATCCCGCCGTCGTGGATGTCGCCGGTGTCCCTGA
AGCCGCAGTTCAGGTAGGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MAGGWAKDGAVSEQIEASISDELARMNARRAPAGESLTHCADCEEEIPEARRLAIPGVKLCIDCQEERDGVQRQRGGINR
RGSKDSQLK

Sequences:

>Translated_89_residues
MAGGWAKDGAVSEQIEASISDELARMNARRAPAGESLTHCADCEEEIPEARRLAIPGVKLCIDCQEERDGVQRQRGGINR
RGSKDSQLK
>Mature_88_residues
AGGWAKDGAVSEQIEASISDELARMNARRAPAGESLTHCADCEEEIPEARRLAIPGVKLCIDCQEERDGVQRQRGGINRR
GSKDSQLK

Specific function: Unknown

COG id: COG1734

COG function: function code T; DnaK suppressor protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 dksA C4-type zinc finger [H]

Homologues:

Organism=Escherichia coli, GI1787022, Length=89, Percent_Identity=56.1797752808989, Blast_Score=96, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020460
- InterPro:   IPR000962
- InterPro:   IPR020458 [H]

Pfam domain/function: PF01258 zf-dskA_traR [H]

EC number: NA

Molecular weight: Translated: 9694; Mature: 9563

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: PS51128 ZF_DKSA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
4.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGGWAKDGAVSEQIEASISDELARMNARRAPAGESLTHCADCEEEIPEARRLAIPGVKL
CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHCHHHHHHCCCCCEE
CIDCQEERDGVQRQRGGINRRGSKDSQLK
EEECCHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
AGGWAKDGAVSEQIEASISDELARMNARRAPAGESLTHCADCEEEIPEARRLAIPGVKL
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHCHHHHCHHHHHHCCCCCEE
CIDCQEERDGVQRQRGGINRRGSKDSQLK
EEECCHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]