| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is pobA [H]
Identifier: 99080402
GI number: 99080402
Start: 597039
End: 598208
Strand: Reverse
Name: pobA [H]
Synonym: TM1040_0561
Alternate gene names: 99080402
Gene position: 598208-597039 (Counterclockwise)
Preceding gene: 99080405
Following gene: 99080401
Centisome position: 18.69
GC content: 58.63
Gene sequence:
>1170_bases ATGCGCACACAGGTTGTAATTGTTGGTGGCGGCCCATCAGGAATGCTGCTGGGACAGCTTTTGCACCTCAATGGCATCGA CACCATCGTCCTGGAACGACGGACCAAGGAGCATGTGCTCAGCCGCATTCGCGCCGGCATCCTCGAGCAGGGCTTGGTTG AGCTGATGCATAAAGCAGGCGTCGGTGCGCGGCTCGAGCGCGAGAGCTTTCGCCATCACGGGACATTGATTTCACACAAT GACGAGATGTTCGGCATAAATTTTGAGCGCCTGATCGGTAAATCGGTGACGCTATATGGCCAAACCGAGGTGACCCGCGA TCTCTATGAGGCGCGCGAAAGCGTTGGCGCGACCACGTTTTTTGACGTCGAAGATGCCACAATCCACGATGCTGACACCG AGAGCCCCTATGTCACCTTTCAAAAGGACGGCAAAGAGACTCGCATCGATTGCGATTTCATCGCGGGCTGCGACGGGTTT CATGGTGTCAGCCGACGCACGATCCCGGCCTCTGTCCGCACGGAATACGAAAAAGTCTATCCCTTTGGCTGGCTCGGCAT CCTGTCCGAAACCCCGCCCGTCAATGAGGAGTTGATCTACGCCAATTCAGAGGACGGGTTCGCGCTCTGTTCGATGCGCA ACGCCAATCTCAGCCGCTATTACGTTCAATGCTCTCTGGGCGATGACGTGGGCGATTGGACAGATACCCGGTTCTGGGAC ACCCTGCGCCGCCGCCTGCCGAGCGAGGTCGCAGAGGCCCTGGTCACAGGCCCCTCGATCGAGAAGTCCATCGCACCGCT GCGCTCGTTTGTGAGCGAGCCAATGCGCTGGGGGCGGCTGTTCCTCTGCGGCGATGCGGCTCATATCGTGCCGCCAACCG GGGCGAAGGGTCTGAATACTGCCGCCTCGGACGTGCATTACCTCTACACGGGATTGATCCAGTATTATGAGGACAAAGAC AGCGAAGGGATCGATCGCTACTCCGAAAAAGCCCTCGCCCGTGTTTGGAAGGCGGAGCGGTTCAGCTGGTGGATGACGTC CTTGCTGCATCGGTTCCCCGACCAAGGTCCGTTTGACGTAAAGATGCAGGCGGCAGAACTGGCGTTCCTGCGCGACAACA AGGACGCGCAACGCGTGCTTGCCACCAACTATGTCGGGCTGCCTTACTGA
Upstream 100 bases:
>100_bases CGTGCTGATAGTTTACCATATTGGTATTCATACCTGCCAATAACTCATTTTTGAATAATGAAATTGCATGATAGCCTTTG CTCCATTGGAGGAGACGATC
Downstream 100 bases:
>100_bases TGCGGGTAGCACGCCTGCAAAACGCCATGCTGCATTGGCGAGAGGACGGCAGCCCGGATGGCCCGGCAGTGGTCTTTGCC AACTCGCTTGGGACCGATCT
Product: 4-hydroxybenzoate 3-monooxygenase
Products: NA
Alternate protein names: PHBH; 4-hydroxybenzoate 3-monooxygenase [H]
Number of amino acids: Translated: 389; Mature: 389
Protein sequence:
>389_residues MRTQVVIVGGGPSGMLLGQLLHLNGIDTIVLERRTKEHVLSRIRAGILEQGLVELMHKAGVGARLERESFRHHGTLISHN DEMFGINFERLIGKSVTLYGQTEVTRDLYEARESVGATTFFDVEDATIHDADTESPYVTFQKDGKETRIDCDFIAGCDGF HGVSRRTIPASVRTEYEKVYPFGWLGILSETPPVNEELIYANSEDGFALCSMRNANLSRYYVQCSLGDDVGDWTDTRFWD TLRRRLPSEVAEALVTGPSIEKSIAPLRSFVSEPMRWGRLFLCGDAAHIVPPTGAKGLNTAASDVHYLYTGLIQYYEDKD SEGIDRYSEKALARVWKAERFSWWMTSLLHRFPDQGPFDVKMQAAELAFLRDNKDAQRVLATNYVGLPY
Sequences:
>Translated_389_residues MRTQVVIVGGGPSGMLLGQLLHLNGIDTIVLERRTKEHVLSRIRAGILEQGLVELMHKAGVGARLERESFRHHGTLISHN DEMFGINFERLIGKSVTLYGQTEVTRDLYEARESVGATTFFDVEDATIHDADTESPYVTFQKDGKETRIDCDFIAGCDGF HGVSRRTIPASVRTEYEKVYPFGWLGILSETPPVNEELIYANSEDGFALCSMRNANLSRYYVQCSLGDDVGDWTDTRFWD TLRRRLPSEVAEALVTGPSIEKSIAPLRSFVSEPMRWGRLFLCGDAAHIVPPTGAKGLNTAASDVHYLYTGLIQYYEDKD SEGIDRYSEKALARVWKAERFSWWMTSLLHRFPDQGPFDVKMQAAELAFLRDNKDAQRVLATNYVGLPY >Mature_389_residues MRTQVVIVGGGPSGMLLGQLLHLNGIDTIVLERRTKEHVLSRIRAGILEQGLVELMHKAGVGARLERESFRHHGTLISHN DEMFGINFERLIGKSVTLYGQTEVTRDLYEARESVGATTFFDVEDATIHDADTESPYVTFQKDGKETRIDCDFIAGCDGF HGVSRRTIPASVRTEYEKVYPFGWLGILSETPPVNEELIYANSEDGFALCSMRNANLSRYYVQCSLGDDVGDWTDTRFWD TLRRRLPSEVAEALVTGPSIEKSIAPLRSFVSEPMRWGRLFLCGDAAHIVPPTGAKGLNTAASDVHYLYTGLIQYYEDKD SEGIDRYSEKALARVWKAERFSWWMTSLLHRFPDQGPFDVKMQAAELAFLRDNKDAQRVLATNYVGLPY
Specific function: Unknown
COG id: COG0654
COG function: function code HC; 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012733 - InterPro: IPR002938 - InterPro: IPR003042 [H]
Pfam domain/function: PF01494 FAD_binding_3 [H]
EC number: =1.14.13.2 [H]
Molecular weight: Translated: 43817; Mature: 43817
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRTQVVIVGGGPSGMLLGQLLHLNGIDTIVLERRTKEHVLSRIRAGILEQGLVELMHKAG CCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCC VGARLERESFRHHGTLISHNDEMFGINFERLIGKSVTLYGQTEVTRDLYEARESVGATTF CCCCHHHHHHHHCCCEEECCCCEECCCHHHHHCCCEEEECCHHHHHHHHHHHHHCCCEEE FDVEDATIHDADTESPYVTFQKDGKETRIDCDFIAGCDGFHGVSRRTIPASVRTEYEKVY EECCCCEEECCCCCCCEEEEECCCCCCEECEEEEECCCCCCCCCCCCCCHHHHHHHHHHC PFGWLGILSETPPVNEELIYANSEDGFALCSMRNANLSRYYVQCSLGDDVGDWTDTRFWD CCCEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHH TLRRRLPSEVAEALVTGPSIEKSIAPLRSFVSEPMRWGRLFLCGDAAHIVPPTGAKGLNT HHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCEECCCCCCCCCCH AASDVHYLYTGLIQYYEDKDSEGIDRYSEKALARVWKAERFSWWMTSLLHRFPDQGPFDV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE KMQAAELAFLRDNKDAQRVLATNYVGLPY EEHHHHEEHHCCCCHHHHHHHHCCCCCCC >Mature Secondary Structure MRTQVVIVGGGPSGMLLGQLLHLNGIDTIVLERRTKEHVLSRIRAGILEQGLVELMHKAG CCEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCC VGARLERESFRHHGTLISHNDEMFGINFERLIGKSVTLYGQTEVTRDLYEARESVGATTF CCCCHHHHHHHHCCCEEECCCCEECCCHHHHHCCCEEEECCHHHHHHHHHHHHHCCCEEE FDVEDATIHDADTESPYVTFQKDGKETRIDCDFIAGCDGFHGVSRRTIPASVRTEYEKVY EECCCCEEECCCCCCCEEEEECCCCCCEECEEEEECCCCCCCCCCCCCCHHHHHHHHHHC PFGWLGILSETPPVNEELIYANSEDGFALCSMRNANLSRYYVQCSLGDDVGDWTDTRFWD CCCEEECCCCCCCCCCEEEEECCCCCEEEEEECCCCCEEEEEEEECCCCCCCCCCHHHHH TLRRRLPSEVAEALVTGPSIEKSIAPLRSFVSEPMRWGRLFLCGDAAHIVPPTGAKGLNT HHHHHCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCEEEEECCCCEECCCCCCCCCCH AASDVHYLYTGLIQYYEDKDSEGIDRYSEKALARVWKAERFSWWMTSLLHRFPDQGPFDV HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCE KMQAAELAFLRDNKDAQRVLATNYVGLPY EEHHHHEEHHCCCCHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 2465205; 10984043; 7939628; 8555229; 8312276 [H]