| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080405
Identifier: 99080405
GI number: 99080405
Start: 600959
End: 602131
Strand: Reverse
Name: 99080405
Synonym: TM1040_0564
Alternate gene names: NA
Gene position: 602131-600959 (Counterclockwise)
Preceding gene: 99080408
Following gene: 99080402
Centisome position: 18.81
GC content: 60.7
Gene sequence:
>1173_bases ATGCCAGCCTTTGCAAGATGGATCAAACGCCTCGTGGGTCTCGCCATATGTGCGATTATGGCGTTTTTTATCTTCGCTCC GGCGGCTCTCGACCGCCAGCGCAACCCCGTTGCAGAGCATGACTCTTATCCGATCAGCGACGCAGCACGTGACCTGCACC AAAGCCTCATCATCGGCGATCTGCACGCAGACCCGCTGCTGTGGAAACGTGACCTGACCAAGCGCAACGCGCGCGGCCAT GTGGACATCCCCCGGCTGATCGAGGGCAATGTCACCTTGCAGGTCTTCACCGCTGTGACCAAATCCCCCGCCGGGCAGAA CTATGACCATAATGATGCGGATGCGCGGGACAACATCACGCTGCTTGCGATCGGTCAGCTTTGGCCCCTTCCCACCTGGA CGTCGCTCTATGAACGCGCCCTGCATCAAGCCGAGAAGTTGCACCGGTTCCAGGAACGCTCCGAAGGGCGGCTGCGTATC ATTCGTACTGAGGCCGATCTCGACATTCTGCTGGAGCGCAAACGCGCAGGTCACGAAGTCGTCGGTGGGCTTTTGGGCAT CGAGGGCGCACACCCGCTGGAGGGCGACATCAGTAAACTGCAAGGCCTAGAGGAGGCCGGATACCGCCTGATCGCGCTGC AGCATTTCTTTGACAATGCGCTTGGGGGTTCGTTGCATGGCGCAGGCGATCTGGGTCTCTCGGCGTTTGGGCGCGACGTG GTTTCGGAGTCGGTTGATCGCGGCTTGATCCTGGATCTTGCACATTCCAGCCCGCAGGTGGTGCGGGATGTCATTGCGAT GACCGATGTCCCGTTGGTTCTGTCGCACACCGGCATCCACAAGGCCTGCCCCGTAAAGCGAAACCTACCGGACGCCCTGA TGCGCGACATCGCCGCTACGGGCGGGGTGATCGGAATTGGCTACTGGGCAGATGCCGTGTGTGATGCCTCCCCCAGTGGG ATCGCCCGTGCCATTCACAGCGCCATCGAGGTGGTTGGAGAAAACCACGTTGCCCTTGGTTCAGACTTTGACGGCTCTGT TGCGACGACTTTCGACAGCTCCGAACTTGCTGCGCTAACCCAGGCCATGCTCGATGAGGGGCTGAGCGAGACCCAAATCC GCAAAGTCGCCGGGGAGAACATGTTGCGCGTCCTGCGCGCACGCCTCGACTGA
Upstream 100 bases:
>100_bases CAAACATCTCGATGCCGTGGCGCGAGGCGCGAGACAAGAGGGTTGCGTTTGTGCTGTTGCACCGTAGCCTGCCTACAAAC CAAATGTCAGGATCTCCTCC
Downstream 100 bases:
>100_bases GTGCAAAGCATGCCTTTGGCAGAGCGCCTTTGCACGGGCGCAACCAGAAACCCGACAACAATAGTCAACTATTTGATTTG GTTGAGTTTTTTATTGACCT
Product: peptidase M19, renal dipeptidase
Products: NA
Alternate protein names: ORF X [H]
Number of amino acids: Translated: 390; Mature: 389
Protein sequence:
>390_residues MPAFARWIKRLVGLAICAIMAFFIFAPAALDRQRNPVAEHDSYPISDAARDLHQSLIIGDLHADPLLWKRDLTKRNARGH VDIPRLIEGNVTLQVFTAVTKSPAGQNYDHNDADARDNITLLAIGQLWPLPTWTSLYERALHQAEKLHRFQERSEGRLRI IRTEADLDILLERKRAGHEVVGGLLGIEGAHPLEGDISKLQGLEEAGYRLIALQHFFDNALGGSLHGAGDLGLSAFGRDV VSESVDRGLILDLAHSSPQVVRDVIAMTDVPLVLSHTGIHKACPVKRNLPDALMRDIAATGGVIGIGYWADAVCDASPSG IARAIHSAIEVVGENHVALGSDFDGSVATTFDSSELAALTQAMLDEGLSETQIRKVAGENMLRVLRARLD
Sequences:
>Translated_390_residues MPAFARWIKRLVGLAICAIMAFFIFAPAALDRQRNPVAEHDSYPISDAARDLHQSLIIGDLHADPLLWKRDLTKRNARGH VDIPRLIEGNVTLQVFTAVTKSPAGQNYDHNDADARDNITLLAIGQLWPLPTWTSLYERALHQAEKLHRFQERSEGRLRI IRTEADLDILLERKRAGHEVVGGLLGIEGAHPLEGDISKLQGLEEAGYRLIALQHFFDNALGGSLHGAGDLGLSAFGRDV VSESVDRGLILDLAHSSPQVVRDVIAMTDVPLVLSHTGIHKACPVKRNLPDALMRDIAATGGVIGIGYWADAVCDASPSG IARAIHSAIEVVGENHVALGSDFDGSVATTFDSSELAALTQAMLDEGLSETQIRKVAGENMLRVLRARLD >Mature_389_residues PAFARWIKRLVGLAICAIMAFFIFAPAALDRQRNPVAEHDSYPISDAARDLHQSLIIGDLHADPLLWKRDLTKRNARGHV DIPRLIEGNVTLQVFTAVTKSPAGQNYDHNDADARDNITLLAIGQLWPLPTWTSLYERALHQAEKLHRFQERSEGRLRII RTEADLDILLERKRAGHEVVGGLLGIEGAHPLEGDISKLQGLEEAGYRLIALQHFFDNALGGSLHGAGDLGLSAFGRDVV SESVDRGLILDLAHSSPQVVRDVIAMTDVPLVLSHTGIHKACPVKRNLPDALMRDIAATGGVIGIGYWADAVCDASPSGI ARAIHSAIEVVGENHVALGSDFDGSVATTFDSSELAALTQAMLDEGLSETQIRKVAGENMLRVLRARLD
Specific function: Unknown
COG id: COG2355
COG function: function code E; Zn-dependent dipeptidase, microsomal dipeptidase homolog
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M19 family [H]
Homologues:
Organism=Homo sapiens, GI189458885, Length=356, Percent_Identity=25, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI4758190, Length=356, Percent_Identity=25, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI11641269, Length=243, Percent_Identity=27.5720164609054, Blast_Score=94, Evalue=2e-19, Organism=Homo sapiens, GI193211608, Length=325, Percent_Identity=23.0769230769231, Blast_Score=83, Evalue=5e-16, Organism=Homo sapiens, GI193211610, Length=325, Percent_Identity=23.0769230769231, Blast_Score=79, Evalue=6e-15, Organism=Drosophila melanogaster, GI161083233, Length=398, Percent_Identity=26.8844221105528, Blast_Score=112, Evalue=3e-25, Organism=Drosophila melanogaster, GI281362638, Length=326, Percent_Identity=26.9938650306748, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI281362636, Length=326, Percent_Identity=26.9938650306748, Blast_Score=103, Evalue=2e-22, Organism=Drosophila melanogaster, GI221475880, Length=400, Percent_Identity=24.75, Blast_Score=100, Evalue=1e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008257 [H]
Pfam domain/function: PF01244 Peptidase_M19 [H]
EC number: NA
Molecular weight: Translated: 42393; Mature: 42262
Theoretical pI: Translated: 6.08; Mature: 6.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPAFARWIKRLVGLAICAIMAFFIFAPAALDRQRNPVAEHDSYPISDAARDLHQSLIIGD CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC LHADPLLWKRDLTKRNARGHVDIPRLIEGNVTLQVFTAVTKSPAGQNYDHNDADARDNIT CCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCEE LLAIGQLWPLPTWTSLYERALHQAEKLHRFQERSEGRLRIIRTEADLDILLERKRAGHEV EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCHHH VGGLLGIEGAHPLEGDISKLQGLEEAGYRLIALQHFFDNALGGSLHGAGDLGLSAFGRDV HHHHHCCCCCCCCCCCHHHHCCHHHCCCEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHH VSESVDRGLILDLAHSSPQVVRDVIAMTDVPLVLSHTGIHKACPVKRNLPDALMRDIAAT HHHHHCCCEEEEECCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHC GGVIGIGYWADAVCDASPSGIARAIHSAIEVVGENHVALGSDFDGSVATTFDSSELAALT CCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHH QAMLDEGLSETQIRKVAGENMLRVLRARLD HHHHHCCCCHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure PAFARWIKRLVGLAICAIMAFFIFAPAALDRQRNPVAEHDSYPISDAARDLHQSLIIGD CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC LHADPLLWKRDLTKRNARGHVDIPRLIEGNVTLQVFTAVTKSPAGQNYDHNDADARDNIT CCCCCHHHHHHHHHCCCCCCCCCCHHHCCCCEEEEEEHHHCCCCCCCCCCCCCCCCCCEE LLAIGQLWPLPTWTSLYERALHQAEKLHRFQERSEGRLRIIRTEADLDILLERKRAGHEV EEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCHHH VGGLLGIEGAHPLEGDISKLQGLEEAGYRLIALQHFFDNALGGSLHGAGDLGLSAFGRDV HHHHHCCCCCCCCCCCHHHHCCHHHCCCEEEHHHHHHHHHCCCCCCCCCCCCHHHHHHHH VSESVDRGLILDLAHSSPQVVRDVIAMTDVPLVLSHTGIHKACPVKRNLPDALMRDIAAT HHHHHCCCEEEEECCCCHHHHHHHHHHCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHC GGVIGIGYWADAVCDASPSGIARAIHSAIEVVGENHVALGSDFDGSVATTFDSSELAALT CCEEEECHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCEEEECCCHHHHHHH QAMLDEGLSETQIRKVAGENMLRVLRARLD HHHHHCCCCHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1313537 [H]