Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080397

Identifier: 99080397

GI number: 99080397

Start: 593672

End: 594505

Strand: Reverse

Name: 99080397

Synonym: TM1040_0556

Alternate gene names: NA

Gene position: 594505-593672 (Counterclockwise)

Preceding gene: 99080398

Following gene: 99080396

Centisome position: 18.57

GC content: 60.79

Gene sequence:

>834_bases
ATGAGCACCCCCTGCATCCTCTGCGTCGCCATCACCGGGTCCTTGCCGACCAAGGACAACAATCCGGCGGTGCCGATCAC
CATCTCCGAGCAGATCGAGAGCACCCATGAAGCCTTTGAGGCCGGCGCAACGATCTGCCACGCGCATGTCAGGAATGACG
ATCAAACGCCCTCTTCGGACCCGGAGAAATTCGAACGTCTCAAGGAAGGGCTGGAAAAACACTGCCCCGGCATGATCATC
CAGTTCTCCACGGGGGGGCGGTCGGGTGCAGGCAAGGCGCGTGGGGGCATGTTGCCGCTTGCGCCCGACATGGCTTCGCT
CTCGGTTGGGTCGAACAATTTCCCGACCCGCGTCTATGAGAATCCACCTGACCTCGTGGACTGGCTGGCGGGCGAGATGC
GCACGCATCAGGTGACACCCGAAGTGGAAGCCTTTGACCTCAGCCATATCCTGAATGCGATTGCGCTACACAAGAGCGGT
GCGCTTTACGGCAAACTCTATGTGCAGTTTGTTATGGGCGTGAAAAACGCCATGCCCGCCGACAAGGAGGTCTTCGACTT
CTATGTTGATCTGGTCAAACGCCGCGCGCCCGATGCAAACTGGTGTGCCGCAGGGATTGGCGCAAACCAATTGGTCGTCA
ACGAATGGGCCATCGCCGCCGGGGGCCATACGCGCGCCGGGCTTGAAGACAACGTGCGCCTCGACCGCAATACGCTGGCC
CCTTCTAACGCGGCACTGATCCGGCGCGCTGCCGAACTCTGCGAAAAATATGAGCGCCCCGTCGCCACCTGGCAACAGGC
CAGAGAGATCCTTGACGTGCCATTGCGGGCCTGA

Upstream 100 bases:

>100_bases
AACCCTCATTGCCGAGGCACAGGGCGACGGGCAGTATCACTTTGACATCCGCCTCCAGGGGCACAATGAAACCGTCTTTT
TCGACATCTGAGGCCCGATC

Downstream 100 bases:

>100_bases
TCTGCTGTTCTGACTCCGCTTCGAAGGACCGTGCCACCTGTGAATCCGCTGACCTCATCGAACCCCTATTTTGCAGGCCT
TTTTGCCGACCAGGAAATCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 277; Mature: 276

Protein sequence:

>277_residues
MSTPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSDPEKFERLKEGLEKHCPGMII
QFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYENPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSG
ALYGKLYVQFVMGVKNAMPADKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLA
PSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA

Sequences:

>Translated_277_residues
MSTPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSDPEKFERLKEGLEKHCPGMII
QFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYENPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSG
ALYGKLYVQFVMGVKNAMPADKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLA
PSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA
>Mature_276_residues
STPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSDPEKFERLKEGLEKHCPGMIIQ
FSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYENPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSGA
LYGKLYVQFVMGVKNAMPADKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLAP
SNAALIRRAAELCEKYERPVATWQQAREILDVPLRA

Specific function: Unknown

COG id: COG3246

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 30112; Mature: 29981

Theoretical pI: Translated: 5.86; Mature: 5.86

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSD
CCCCEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCC
PEKFERLKEGLEKHCPGMIIQFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYE
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
NPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSGALYGKLYVQFVMGVKNAMPA
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
DKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLA
CHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECEEEECCCCCCCCCCCCCEECCCCCC
PSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
STPCILCVAITGSLPTKDNNPAVPITISEQIESTHEAFEAGATICHAHVRNDDQTPSSD
CCCEEEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHEEHHHCCCCCCCCCC
PEKFERLKEGLEKHCPGMIIQFSTGGRSGAGKARGGMLPLAPDMASLSVGSNNFPTRVYE
HHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCC
NPPDLVDWLAGEMRTHQVTPEVEAFDLSHILNAIALHKSGALYGKLYVQFVMGVKNAMPA
CCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC
DKEVFDFYVDLVKRRAPDANWCAAGIGANQLVVNEWAIAAGGHTRAGLEDNVRLDRNTLA
CHHHHHHHHHHHHHCCCCCCCEECCCCCCEEEEECEEEECCCCCCCCCCCCCEECCCCCC
PSNAALIRRAAELCEKYERPVATWQQAREILDVPLRA
CCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA