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The map label for this gene is ycgB [H]

Identifier: 99080376

GI number: 99080376

Start: 566278

End: 567795

Strand: Direct

Name: ycgB [H]

Synonym: TM1040_0535

Alternate gene names: 99080376

Gene position: 566278-567795 (Clockwise)

Preceding gene: 99080375

Following gene: 99080378

Centisome position: 17.69

GC content: 55.67

Gene sequence:

>1518_bases
ATGGAGACTGCAAAAACCGCCACCGCCCCCCTGTTTGATGGGCCAGAGTGGACGTTTGAGCTCTTGGAGAAGGCCCGCGA
CGCGATTGAGAAAATCGCGCTGGGCGATCTGGGTCTGGACGTCTATCCCAACCAGATCGAGATTATTTCGGCCGAGCAGA
TGCTCGATGCGTATTCTTGTGTGGGGCTGCCGCTGATGTATCAGCACTGGTCCTTTGGGAAACACTTCGCCCGTGATGAG
GCGCTCTATCGCACCGGGCGTCAGGGGTTGGCCTATGAGATCGTCATCAACTCCAATCCCTGCATCAGCTATAATATGGA
AGAGAACACCATGGCGATGCAGACGCTGGTGATGGCGCATGCGGCGTTCGGGCATAACCACTTCTTCAAGAACAACTATC
TGTTCCAGCAATGGACCGATGCGGATGGCATTCAGGACTATCTGGCCTTTGCCAAGAATTACATCGCCGCCTGCGAAGAG
CGTTATGGCTTTGATGCGGTGGAGGAAATTCTGGATGCAGCGCACGCGCTACAAAGCCAGGGTGTCTTTCGCTATGGCCG
CCCGCCCAAGCCCACAATCGAGGAACGCCGCGCGATGCAGCAGTTGCGTGAAGCCTATGAAAAAGGCCAGAGCGCGCTGG
ATATCTGGACAGATGCAACACTGGGTCTGAAGCGGGATGCGGATGCGCCGGATGCGGATCTGGATCATTCAGAGCGACGC
AAGCGGATGAACCTGCCGCAGGAGAATATTCTCTATTTCTTGGAAAAGCACAGCCCTGTGCTTGAACCCTGGCAAAGGGA
GATCCTGCGCATCGTGCGCATGTTGGCGCAGTATTTTTATCCGCAGAAACAGACCAAGGTGATGAACGAGGGCTGCGCAA
CCTTCGTGCATTACTACATTATCAACGAACTCTACGAGCAGGGGCTGATTACCCAGGGCGCGATGATGGAGATGATGCAC
AGCCACACAAATGTGGTGATGCAGCCCGAATATGACGATCCGCGCTATTCTGGCATCAACCCTTATGCGCTGGGCTTTGC
GATGATGCAGGACATCCGACGGATTTGCGAGGAACCGACGGAGGAGGATCGAGAATGGTTCCCGGATATCGCTGGGAGCA
AGGATTGGCGCGGTGTCCTGCGCAACGCATGGGCCAATTACCGCGATGAGAGCTTTATCCAGCAATATCTCTCGCCGCAT
CTGATCCGTAAGTTCAAGCTCTTTACGCTGACGGATGATGAGAGCCACCCCAAACTGGTGATCAGCCAGATCCATAACCG
CGCGGGCTACAAGGCGATCCGCCGCGATCTCGCGAAACAGTATGATCTTGCCTATATCGAACCGGATATCCAGGTGAGCG
ATGCGGATCTCAAGGGGGATCGCACGCTGAAGCTCGTGCATAAGGTGCGCGACAACGTGCATCTGGCCGAAGCTGACCGG
GATGAGGTGCTCAAACACTTGCGCAGGCTATGGGGGTATGACGTGAAACTCGACGCGGTTGCGGACGGACCACAGTAA

Upstream 100 bases:

>100_bases
AGGCCTGCCGCCATTTTGAGATGCAGCGCGTCTCGGAGCCGGGTCATATCTATCCGATCTTCCGGGAGTTCTTCCTGCCC
AAAGTGAAAGGCTGACCGCG

Downstream 100 bases:

>100_bases
AACCTGCGAACCTCAGAGCAAAAAAGGCGGCCCAAGGAGGCCGCCTTTTGTTTTTTGTATCAGGGGCTTCTTAGAACTCG
ACAACGGCTCGGATCGATTT

Product: SpoVR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 505; Mature: 505

Protein sequence:

>505_residues
METAKTATAPLFDGPEWTFELLEKARDAIEKIALGDLGLDVYPNQIEIISAEQMLDAYSCVGLPLMYQHWSFGKHFARDE
ALYRTGRQGLAYEIVINSNPCISYNMEENTMAMQTLVMAHAAFGHNHFFKNNYLFQQWTDADGIQDYLAFAKNYIAACEE
RYGFDAVEEILDAAHALQSQGVFRYGRPPKPTIEERRAMQQLREAYEKGQSALDIWTDATLGLKRDADAPDADLDHSERR
KRMNLPQENILYFLEKHSPVLEPWQREILRIVRMLAQYFYPQKQTKVMNEGCATFVHYYIINELYEQGLITQGAMMEMMH
SHTNVVMQPEYDDPRYSGINPYALGFAMMQDIRRICEEPTEEDREWFPDIAGSKDWRGVLRNAWANYRDESFIQQYLSPH
LIRKFKLFTLTDDESHPKLVISQIHNRAGYKAIRRDLAKQYDLAYIEPDIQVSDADLKGDRTLKLVHKVRDNVHLAEADR
DEVLKHLRRLWGYDVKLDAVADGPQ

Sequences:

>Translated_505_residues
METAKTATAPLFDGPEWTFELLEKARDAIEKIALGDLGLDVYPNQIEIISAEQMLDAYSCVGLPLMYQHWSFGKHFARDE
ALYRTGRQGLAYEIVINSNPCISYNMEENTMAMQTLVMAHAAFGHNHFFKNNYLFQQWTDADGIQDYLAFAKNYIAACEE
RYGFDAVEEILDAAHALQSQGVFRYGRPPKPTIEERRAMQQLREAYEKGQSALDIWTDATLGLKRDADAPDADLDHSERR
KRMNLPQENILYFLEKHSPVLEPWQREILRIVRMLAQYFYPQKQTKVMNEGCATFVHYYIINELYEQGLITQGAMMEMMH
SHTNVVMQPEYDDPRYSGINPYALGFAMMQDIRRICEEPTEEDREWFPDIAGSKDWRGVLRNAWANYRDESFIQQYLSPH
LIRKFKLFTLTDDESHPKLVISQIHNRAGYKAIRRDLAKQYDLAYIEPDIQVSDADLKGDRTLKLVHKVRDNVHLAEADR
DEVLKHLRRLWGYDVKLDAVADGPQ
>Mature_505_residues
METAKTATAPLFDGPEWTFELLEKARDAIEKIALGDLGLDVYPNQIEIISAEQMLDAYSCVGLPLMYQHWSFGKHFARDE
ALYRTGRQGLAYEIVINSNPCISYNMEENTMAMQTLVMAHAAFGHNHFFKNNYLFQQWTDADGIQDYLAFAKNYIAACEE
RYGFDAVEEILDAAHALQSQGVFRYGRPPKPTIEERRAMQQLREAYEKGQSALDIWTDATLGLKRDADAPDADLDHSERR
KRMNLPQENILYFLEKHSPVLEPWQREILRIVRMLAQYFYPQKQTKVMNEGCATFVHYYIINELYEQGLITQGAMMEMMH
SHTNVVMQPEYDDPRYSGINPYALGFAMMQDIRRICEEPTEEDREWFPDIAGSKDWRGVLRNAWANYRDESFIQQYLSPH
LIRKFKLFTLTDDESHPKLVISQIHNRAGYKAIRRDLAKQYDLAYIEPDIQVSDADLKGDRTLKLVHKVRDNVHLAEADR
DEVLKHLRRLWGYDVKLDAVADGPQ

Specific function: Unknown

COG id: COG2719

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis spoVR [H]

Homologues:

Organism=Escherichia coli, GI1787437, Length=498, Percent_Identity=56.0240963855422, Blast_Score=567, Evalue=1e-163,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007390 [H]

Pfam domain/function: PF04293 SpoVR [H]

EC number: NA

Molecular weight: Translated: 58673; Mature: 58673

Theoretical pI: Translated: 5.20; Mature: 5.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
METAKTATAPLFDGPEWTFELLEKARDAIEKIALGDLGLDVYPNQIEIISAEQMLDAYSC
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHH
VGLPLMYQHWSFGKHFARDEALYRTGRQGLAYEIVINSNPCISYNMEENTMAMQTLVMAH
HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHH
AAFGHNHFFKNNYLFQQWTDADGIQDYLAFAKNYIAACEERYGFDAVEEILDAAHALQSQ
HHHCCCHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GVFRYGRPPKPTIEERRAMQQLREAYEKGQSALDIWTDATLGLKRDADAPDADLDHSERR
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHCCCCCCCCCCCCCCCCCCCHHHHH
KRMNLPQENILYFLEKHSPVLEPWQREILRIVRMLAQYFYPQKQTKVMNEGCATFVHYYI
HHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
INELYEQGLITQGAMMEMMHSHTNVVMQPEYDDPRYSGINPYALGFAMMQDIRRICEEPT
HHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
EEDREWFPDIAGSKDWRGVLRNAWANYRDESFIQQYLSPHLIRKFKLFTLTDDESHPKLV
HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHEEEEEECCCCCCHHHH
ISQIHNRAGYKAIRRDLAKQYDLAYIEPDIQVSDADLKGDRTLKLVHKVRDNVHLAEADR
HHHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCHHHHHHHHHHCCCEECCCCH
DEVLKHLRRLWGYDVKLDAVADGPQ
HHHHHHHHHHHCCCEEEECCCCCCC
>Mature Secondary Structure
METAKTATAPLFDGPEWTFELLEKARDAIEKIALGDLGLDVYPNQIEIISAEQMLDAYSC
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEHHHHHHHHHH
VGLPLMYQHWSFGKHFARDEALYRTGRQGLAYEIVINSNPCISYNMEENTMAMQTLVMAH
HCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEECCCHHHHHHHHHHHHH
AAFGHNHFFKNNYLFQQWTDADGIQDYLAFAKNYIAACEERYGFDAVEEILDAAHALQSQ
HHHCCCHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC
GVFRYGRPPKPTIEERRAMQQLREAYEKGQSALDIWTDATLGLKRDADAPDADLDHSERR
CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEHHCCCCCCCCCCCCCCCCCCCHHHHH
KRMNLPQENILYFLEKHSPVLEPWQREILRIVRMLAQYFYPQKQTKVMNEGCATFVHYYI
HHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
INELYEQGLITQGAMMEMMHSHTNVVMQPEYDDPRYSGINPYALGFAMMQDIRRICEEPT
HHHHHHCCCCCHHHHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
EEDREWFPDIAGSKDWRGVLRNAWANYRDESFIQQYLSPHLIRKFKLFTLTDDESHPKLV
HHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHCHHHHHHEEEEEECCCCCCHHHH
ISQIHNRAGYKAIRRDLAKQYDLAYIEPDIQVSDADLKGDRTLKLVHKVRDNVHLAEADR
HHHHHHHHHHHHHHHHHHHHCCCEEECCCCEECCCCCCCCHHHHHHHHHHCCCEECCCCH
DEVLKHLRRLWGYDVKLDAVADGPQ
HHHHHHHHHHHCCCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 7906689 [H]