| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080365
Identifier: 99080365
GI number: 99080365
Start: 550031
End: 551305
Strand: Reverse
Name: 99080365
Synonym: TM1040_0524
Alternate gene names: NA
Gene position: 551305-550031 (Counterclockwise)
Preceding gene: 99080366
Following gene: 99080364
Centisome position: 17.22
GC content: 63.14
Gene sequence:
>1275_bases GTGACCCAATCGCCCGCGCAAAATGGCCTCGCCGCCTATATGGCGGTGACCGCAGCCTATTGGGCCTTCATGCTCACGGA TGGCGCGCTGCGCATGTTGGTGCTGTTGCACTTTCACACGCTGGGCTTCAGCCCGGTGCAGCTGGCCTATCTCTTTATAC TCTACGAGATCGCGGGCATGGTCACCAACCTCTCGGCGGGCTGGATTGCTGCGCGTTTCGGGTTGACGACCACACTTTAT GCGGGGCTTGCGCTGCAAGTGGTGGCGCTGCTTGCATTGACGCAGCTTGATCCCGGCTGGCAGATCGCCACGTCGGTTGC CTTTGTGATGGGAGTTCAGGGCCTGTCGGGTGTGGCGAAGGATCTGGCCAAGATGGCGTCCAAATCTGCCGTGAAACTGC TCGCCCCCAAAGAAGGCGACGGGCTGTTTCGCTGGGTTGCGGTGCTGACAGGGTCCAAGAACGCGGTCAAAGGGCTGGGC TTTGGGCTGGGCGCGGTGCTTCTGGCGCTTGCCGGGTTCACATGGGCCACGCTCGGAATGGCGCTGATCCTGGCCGCGAT CCTGATTGCGGTTCTGATCGCGATGCCAAAGGGGCTGCCGACGGGACGCAAAGGCGCGAAATTTTCCGAGGTCTTCTCCA AGTCCGCCAACATCAACTGGCTCTCGGCGGCACGGGTGTTTCTCTTCGGGGCGCGCGATGTGTGGTTCGTGGTCGGCATT CCGGTCTACTTCTACGCCGTCATCTCGGACGGCACCGAGGCCAGCAACCGCGCGGCGTTCTTCATGATCGGCAGCTTCAT GGCAGTCTGGATCATCTGCTACGGGGCGGTGCAAGCGGCGGCGCCGCGCATCCTACGGGCCTCGAGCCGCTCTGAGGCAG AGCTGATTTCCGCCGCGCGGCACTGGGCGAGCCTGCTGGCGTTGGTTCCGGCGGCGCTGACCGTGGCCGTGGTGATGTCT GGCGCGCCCGCGCCTTGGCTCACGGCAACACTGGTCATCGGCCTCTTGCTGTTTGGGGCGCTCTTTGCGGTGAACTCCTC CCTGCATTCCTACCTGATCCTTGCCTTCTCCAAGGACGAGCGGGTCACGATGGATGTGGGCTTTTACTACATGGCCAATG CGGGTGGGCGGCTCCTGGGCACGTTGCTTTCTGGTCTCACCTATCAACTGGGCGGGGTCGCGGCCTGCCTTGGCACCGCA GCCCTGATGATCGCACTTAGCGCATTGGCTGCAGGGCGCCTCTCTGCCCCTACATCTGAAAGAGCCACGGCATGA
Upstream 100 bases:
>100_bases TCGTGAACGGAACGCAGGTGAAGATCTATGCGTGGTACGACAATGAGATGGGCTATGCGCATCGTCTGGTGGACGTGGCG ATGATGGTGGGTGAGAGCCT
Downstream 100 bases:
>100_bases GCATCTTCGAGAAATACCTGAGCCTCTGGGTGGCATTGGCGATGACGGCCGGCATTGCGCTTGGCAGTCTGGCCCCCGGC GTGATGGAGGCCATCGCCGC
Product: major facilitator transporter
Products: NA
Alternate protein names: Facilitator Superfamily Protein; Facilitator Superfamily Permease; Facilitator Superfamily Multidrug-Efflux Transporter; Membrane Transporter; Facilitator Superfamily Transporter; Multidrug Efflux Transporter MFS Family; Multidrug-Efflux Transporter; Nonfunctional Facilitator Superfamily Protein; MFS Transporter; Permease Of Facilitator Superfamily; Nitric Oxide Reductase Cytochrome B Subunit
Number of amino acids: Translated: 424; Mature: 423
Protein sequence:
>424_residues MTQSPAQNGLAAYMAVTAAYWAFMLTDGALRMLVLLHFHTLGFSPVQLAYLFILYEIAGMVTNLSAGWIAARFGLTTTLY AGLALQVVALLALTQLDPGWQIATSVAFVMGVQGLSGVAKDLAKMASKSAVKLLAPKEGDGLFRWVAVLTGSKNAVKGLG FGLGAVLLALAGFTWATLGMALILAAILIAVLIAMPKGLPTGRKGAKFSEVFSKSANINWLSAARVFLFGARDVWFVVGI PVYFYAVISDGTEASNRAAFFMIGSFMAVWIICYGAVQAAAPRILRASSRSEAELISAARHWASLLALVPAALTVAVVMS GAPAPWLTATLVIGLLLFGALFAVNSSLHSYLILAFSKDERVTMDVGFYYMANAGGRLLGTLLSGLTYQLGGVAACLGTA ALMIALSALAAGRLSAPTSERATA
Sequences:
>Translated_424_residues MTQSPAQNGLAAYMAVTAAYWAFMLTDGALRMLVLLHFHTLGFSPVQLAYLFILYEIAGMVTNLSAGWIAARFGLTTTLY AGLALQVVALLALTQLDPGWQIATSVAFVMGVQGLSGVAKDLAKMASKSAVKLLAPKEGDGLFRWVAVLTGSKNAVKGLG FGLGAVLLALAGFTWATLGMALILAAILIAVLIAMPKGLPTGRKGAKFSEVFSKSANINWLSAARVFLFGARDVWFVVGI PVYFYAVISDGTEASNRAAFFMIGSFMAVWIICYGAVQAAAPRILRASSRSEAELISAARHWASLLALVPAALTVAVVMS GAPAPWLTATLVIGLLLFGALFAVNSSLHSYLILAFSKDERVTMDVGFYYMANAGGRLLGTLLSGLTYQLGGVAACLGTA ALMIALSALAAGRLSAPTSERATA >Mature_423_residues TQSPAQNGLAAYMAVTAAYWAFMLTDGALRMLVLLHFHTLGFSPVQLAYLFILYEIAGMVTNLSAGWIAARFGLTTTLYA GLALQVVALLALTQLDPGWQIATSVAFVMGVQGLSGVAKDLAKMASKSAVKLLAPKEGDGLFRWVAVLTGSKNAVKGLGF GLGAVLLALAGFTWATLGMALILAAILIAVLIAMPKGLPTGRKGAKFSEVFSKSANINWLSAARVFLFGARDVWFVVGIP VYFYAVISDGTEASNRAAFFMIGSFMAVWIICYGAVQAAAPRILRASSRSEAELISAARHWASLLALVPAALTVAVVMSG APAPWLTATLVIGLLLFGALFAVNSSLHSYLILAFSKDERVTMDVGFYYMANAGGRLLGTLLSGLTYQLGGVAACLGTAA LMIALSALAAGRLSAPTSERATA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44335; Mature: 44204
Theoretical pI: Translated: 10.10; Mature: 10.10
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQSPAQNGLAAYMAVTAAYWAFMLTDGALRMLVLLHFHTLGFSPVQLAYLFILYEIAGM CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH VTNLSAGWIAARFGLTTTLYAGLALQVVALLALTQLDPGWQIATSVAFVMGVQGLSGVAK HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH DLAKMASKSAVKLLAPKEGDGLFRWVAVLTGSKNAVKGLGFGLGAVLLALAGFTWATLGM HHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ALILAAILIAVLIAMPKGLPTGRKGAKFSEVFSKSANINWLSAARVFLFGARDVWFVVGI HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH PVYFYAVISDGTEASNRAAFFMIGSFMAVWIICYGAVQAAAPRILRASSRSEAELISAAR HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH HWASLLALVPAALTVAVVMSGAPAPWLTATLVIGLLLFGALFAVNSSLHSYLILAFSKDE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC RVTMDVGFYYMANAGGRLLGTLLSGLTYQLGGVAACLGTAALMIALSALAAGRLSAPTSE EEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC RATA CCCC >Mature Secondary Structure TQSPAQNGLAAYMAVTAAYWAFMLTDGALRMLVLLHFHTLGFSPVQLAYLFILYEIAGM CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH VTNLSAGWIAARFGLTTTLYAGLALQVVALLALTQLDPGWQIATSVAFVMGVQGLSGVAK HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH DLAKMASKSAVKLLAPKEGDGLFRWVAVLTGSKNAVKGLGFGLGAVLLALAGFTWATLGM HHHHHHHHCCEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH ALILAAILIAVLIAMPKGLPTGRKGAKFSEVFSKSANINWLSAARVFLFGARDVWFVVGI HHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH PVYFYAVISDGTEASNRAAFFMIGSFMAVWIICYGAVQAAAPRILRASSRSEAELISAAR HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH HWASLLALVPAALTVAVVMSGAPAPWLTATLVIGLLLFGALFAVNSSLHSYLILAFSKDE HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCC RVTMDVGFYYMANAGGRLLGTLLSGLTYQLGGVAACLGTAALMIALSALAAGRLSAPTSE EEEEEECEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC RATA CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA