| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080364
Identifier: 99080364
GI number: 99080364
Start: 549000
End: 550034
Strand: Reverse
Name: 99080364
Synonym: TM1040_0523
Alternate gene names: NA
Gene position: 550034-549000 (Counterclockwise)
Preceding gene: 99080365
Following gene: 99080363
Centisome position: 17.18
GC content: 60.87
Gene sequence:
>1035_bases ATGAGCATCTTCGAGAAATACCTGAGCCTCTGGGTGGCATTGGCGATGACGGCCGGCATTGCGCTTGGCAGTCTGGCCCC CGGCGTGATGGAGGCCATCGCCGCGCTGGAGGTGGCCCGTGTCAATTTAGTGGTCGCGGCACTGATCTGGGCCATGGTTT ACCCGATGATGATTGGCGTGAACCCACGAAGCCTACGAGATGTGGCGCGCCAGCCCAAGGGCCTTGCGATCACGCTGGTG GTCAACTGGCTGATCAAACCCTTTACCATGGCCGCACTTGGCGTGCTGTTCTTCGAGGTGGTCTTTGCGCCCTTTCTGGA GCCACAAGACGCACAGCAGTATATCGCGGGGCTGATCCTTTTGGGGGCCGCGCCCTGCACCGCGATGGTTTTTGTGTGGT CGCAACTCACCCGGGGCGACGAAAGCTACACCCTGCTGCAAGTCTCGGTGAACGATCTCATCATGGTGGTGGCCTTTGCC CCTATCGTGGCCTTTCTCTTGGGTGTCACGGACATTGAGGTGCCATGGAGCACGCTGATCCTGTCGGCGGTGCTGTTTGT TGCTCTGCCGCTGATGGCCGGTCTCTGGACCCGCAACCGTTTGGCGGAAGAGGCGCGTATCACGGCCTTTCTCGCACGGA TCAAACCGCTCTCGATGCTGGGGCTGATCACAACGGTGGTGATCCTGTTTGGCCTGCAAGGTCAGGTCATTCTGGACCGC CCGAGCGTGATTGCGATGATCGCCGTGCCCATCCTGATCCAGAGCTACGGGATCTTCTTTCTCGCCTATGGCGCCGCCTA TGCGCTGCGGGTGCCACATCGGATCGCAGCACCCTGCGCGCTGATCGGGACGTCGAATTTCTTTGAACTGGCGGTGGCTG TCGCGATCAGCCTCTTTGGGCTTCACTCCGGGGCGGCGCTCGCAACCGTGGTTGGCGTACTGGTCGAGGTTCCAGTGATG CTGACACTGGTGGCCTTTGCCAATCGCACCCGTGCCAGGTTTGCCTTGACCGGAGCAGACCACCAGGCAAGCTGA
Upstream 100 bases:
>100_bases GCGGGGTCGCGGCCTGCCTTGGCACCGCAGCCCTGATGATCGCACTTAGCGCATTGGCTGCAGGGCGCCTCTCTGCCCCT ACATCTGAAAGAGCCACGGC
Downstream 100 bases:
>100_bases GCCCTCATGCGCTGAGGAGGTCCACCATGTCCGAGGTCACTGCAAGCTGCCTGTGCGGCGATATCCGCGTCAGAGCCTCC GGGTCCCCCATCGGTGTCGG
Product: bile acid:sodium symporter
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MSIFEKYLSLWVALAMTAGIALGSLAPGVMEAIAALEVARVNLVVAALIWAMVYPMMIGVNPRSLRDVARQPKGLAITLV VNWLIKPFTMAALGVLFFEVVFAPFLEPQDAQQYIAGLILLGAAPCTAMVFVWSQLTRGDESYTLLQVSVNDLIMVVAFA PIVAFLLGVTDIEVPWSTLILSAVLFVALPLMAGLWTRNRLAEEARITAFLARIKPLSMLGLITTVVILFGLQGQVILDR PSVIAMIAVPILIQSYGIFFLAYGAAYALRVPHRIAAPCALIGTSNFFELAVAVAISLFGLHSGAALATVVGVLVEVPVM LTLVAFANRTRARFALTGADHQAS
Sequences:
>Translated_344_residues MSIFEKYLSLWVALAMTAGIALGSLAPGVMEAIAALEVARVNLVVAALIWAMVYPMMIGVNPRSLRDVARQPKGLAITLV VNWLIKPFTMAALGVLFFEVVFAPFLEPQDAQQYIAGLILLGAAPCTAMVFVWSQLTRGDESYTLLQVSVNDLIMVVAFA PIVAFLLGVTDIEVPWSTLILSAVLFVALPLMAGLWTRNRLAEEARITAFLARIKPLSMLGLITTVVILFGLQGQVILDR PSVIAMIAVPILIQSYGIFFLAYGAAYALRVPHRIAAPCALIGTSNFFELAVAVAISLFGLHSGAALATVVGVLVEVPVM LTLVAFANRTRARFALTGADHQAS >Mature_343_residues SIFEKYLSLWVALAMTAGIALGSLAPGVMEAIAALEVARVNLVVAALIWAMVYPMMIGVNPRSLRDVARQPKGLAITLVV NWLIKPFTMAALGVLFFEVVFAPFLEPQDAQQYIAGLILLGAAPCTAMVFVWSQLTRGDESYTLLQVSVNDLIMVVAFAP IVAFLLGVTDIEVPWSTLILSAVLFVALPLMAGLWTRNRLAEEARITAFLARIKPLSMLGLITTVVILFGLQGQVILDRP SVIAMIAVPILIQSYGIFFLAYGAAYALRVPHRIAAPCALIGTSNFFELAVAVAISLFGLHSGAALATVVGVLVEVPVML TLVAFANRTRARFALTGADHQAS
Specific function: Unknown
COG id: COG0798
COG function: function code P; Arsenite efflux pump ACR3 and related permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ACR3 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6325459, Length=297, Percent_Identity=26.9360269360269, Blast_Score=84, Evalue=2e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004706 - InterPro: IPR002657 [H]
Pfam domain/function: PF01758 SBF [H]
EC number: NA
Molecular weight: Translated: 36853; Mature: 36722
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFEKYLSLWVALAMTAGIALGSLAPGVMEAIAALEVARVNLVVAALIWAMVYPMMIGV CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NPRSLRDVARQPKGLAITLVVNWLIKPFTMAALGVLFFEVVFAPFLEPQDAQQYIAGLIL CHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LGAAPCTAMVFVWSQLTRGDESYTLLQVSVNDLIMVVAFAPIVAFLLGVTDIEVPWSTLI HCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH LSAVLFVALPLMAGLWTRNRLAEEARITAFLARIKPLSMLGLITTVVILFGLQGQVILDR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC PSVIAMIAVPILIQSYGIFFLAYGAAYALRVPHRIAAPCALIGTSNFFELAVAVAISLFG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEECCCHHHHHHHHHHHHHHH LHSGAALATVVGVLVEVPVMLTLVAFANRTRARFALTGADHQAS CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCC >Mature Secondary Structure SIFEKYLSLWVALAMTAGIALGSLAPGVMEAIAALEVARVNLVVAALIWAMVYPMMIGV CHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NPRSLRDVARQPKGLAITLVVNWLIKPFTMAALGVLFFEVVFAPFLEPQDAQQYIAGLIL CHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH LGAAPCTAMVFVWSQLTRGDESYTLLQVSVNDLIMVVAFAPIVAFLLGVTDIEVPWSTLI HCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHH LSAVLFVALPLMAGLWTRNRLAEEARITAFLARIKPLSMLGLITTVVILFGLQGQVILDR HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECC PSVIAMIAVPILIQSYGIFFLAYGAAYALRVPHRIAAPCALIGTSNFFELAVAVAISLFG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCEECCCHHHHHHHHHHHHHHH LHSGAALATVVGVLVEVPVMLTLVAFANRTRARFALTGADHQAS CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEEEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8905231 [H]