| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080352
Identifier: 99080352
GI number: 99080352
Start: 537112
End: 538005
Strand: Direct
Name: 99080352
Synonym: TM1040_0511
Alternate gene names: NA
Gene position: 537112-538005 (Clockwise)
Preceding gene: 99080351
Following gene: 99080353
Centisome position: 16.78
GC content: 61.19
Gene sequence:
>894_bases ATGACCACACTTGGCATAGATCATCCGCTTGTCTGTGTGCGCGATCTGGCCGCGAAGCGCGCGACGTATCAAAGCCTCGG CTTTTTGATGAAGCCCCCGGGGATGCACCCTTGGGGCACCTCGACGGCGCTGGTGATCTTTCGAAACCAGCTTCTTGAGC TGGTCAGTATTGAGGATGAGAGCCTGCTGGATGGCTATGCAGCGGGATCATTCCGCTTTGGCCGTCATGTCGAGGCGTGG CTGGCAGAGCGCGAAGGGGTCTGCCTTTCTGCACTCAATTCAATGGATGCTGAGGCGGATGAGGCAGCAGTGCTGGCGCG CGGTGGCAGCTGTGCTGGCACGGTTGAATTCGGGCGCGACGTGGTGCGCGATGATGGCACGCCGGATCGTACCAAGACCA CGCTCAAGATTTTCCCGCATGCGGGGTTGCCGCGCCTCAGCATGTTTGCCTGCCAGCAACATCGCCGCGACCTGATCGAG TTTCCTGATTGGATGGATCATCCCAATGGGGCACATGGCTTTGCCTCTGCGACCATCCTTGCCGCGCCTTCGGATCAGGG CAGGGTGCGCGATTGGCTGTCCGTGCTCCACGGAGCTGACGCGGTACGGGACACCGACTGGGGATTTGAGGTTGCAACAA CCAATGGGCGGTGGCGCGTGGTTAGCCGGGCCACCGCGCCTGCGCTCTTGGGAAAGCTGCCCGACGGGCTCGCGTCCGAT GGCGCGCCATCGGTGATCTCGCTCGACATACGCTGCCATGCGCTGTCACAGCTTCGCCCCTTCGTCGAGGCAGGAGAGTT CGTCTGCCAGGACGTCAATGGGGCCTTGGTGCTGACAGAGGTTGCGCGTCTGGGTGGCATCCTTCTGAGTTTTCACGAAA TACCAAAGGTTTGA
Upstream 100 bases:
>100_bases TGCCCGCGGGCCATGTGGTTGCGGGGCCACCCGCGTCAGATCGGGGTGTCGGTCGCTTCGCGGGCTTCACACCTTTGCAG CAACTCAGGGGGCAAGACAG
Downstream 100 bases:
>100_bases GAGAGAGCATGTTCGACACGACGCATATCGAAGAGGCCATCGCCCTGCGCCATGACCTTCATCGCCACCCAGAGTTGGGG TTCGAAGAGCATCGCACCTC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MTTLGIDHPLVCVRDLAAKRATYQSLGFLMKPPGMHPWGTSTALVIFRNQLLELVSIEDESLLDGYAAGSFRFGRHVEAW LAEREGVCLSALNSMDAEADEAAVLARGGSCAGTVEFGRDVVRDDGTPDRTKTTLKIFPHAGLPRLSMFACQQHRRDLIE FPDWMDHPNGAHGFASATILAAPSDQGRVRDWLSVLHGADAVRDTDWGFEVATTNGRWRVVSRATAPALLGKLPDGLASD GAPSVISLDIRCHALSQLRPFVEAGEFVCQDVNGALVLTEVARLGGILLSFHEIPKV
Sequences:
>Translated_297_residues MTTLGIDHPLVCVRDLAAKRATYQSLGFLMKPPGMHPWGTSTALVIFRNQLLELVSIEDESLLDGYAAGSFRFGRHVEAW LAEREGVCLSALNSMDAEADEAAVLARGGSCAGTVEFGRDVVRDDGTPDRTKTTLKIFPHAGLPRLSMFACQQHRRDLIE FPDWMDHPNGAHGFASATILAAPSDQGRVRDWLSVLHGADAVRDTDWGFEVATTNGRWRVVSRATAPALLGKLPDGLASD GAPSVISLDIRCHALSQLRPFVEAGEFVCQDVNGALVLTEVARLGGILLSFHEIPKV >Mature_296_residues TTLGIDHPLVCVRDLAAKRATYQSLGFLMKPPGMHPWGTSTALVIFRNQLLELVSIEDESLLDGYAAGSFRFGRHVEAWL AEREGVCLSALNSMDAEADEAAVLARGGSCAGTVEFGRDVVRDDGTPDRTKTTLKIFPHAGLPRLSMFACQQHRRDLIEF PDWMDHPNGAHGFASATILAAPSDQGRVRDWLSVLHGADAVRDTDWGFEVATTNGRWRVVSRATAPALLGKLPDGLASDG APSVISLDIRCHALSQLRPFVEAGEFVCQDVNGALVLTEVARLGGILLSFHEIPKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32152; Mature: 32021
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTLGIDHPLVCVRDLAAKRATYQSLGFLMKPPGMHPWGTSTALVIFRNQLLELVSIEDE CCCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCH SLLDGYAAGSFRFGRHVEAWLAEREGVCLSALNSMDAEADEAAVLARGGSCAGTVEFGRD HHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCEEEHHHHHH VVRDDGTPDRTKTTLKIFPHAGLPRLSMFACQQHRRDLIEFPDWMDHPNGAHGFASATIL HHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE AAPSDQGRVRDWLSVLHGADAVRDTDWGFEVATTNGRWRVVSRATAPALLGKLPDGLASD ECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCCCCCCCC GAPSVISLDIRCHALSQLRPFVEAGEFVCQDVNGALVLTEVARLGGILLSFHEIPKV CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure TTLGIDHPLVCVRDLAAKRATYQSLGFLMKPPGMHPWGTSTALVIFRNQLLELVSIEDE CCCCCCCCHHHHHHHHHHHHHHHHCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCH SLLDGYAAGSFRFGRHVEAWLAEREGVCLSALNSMDAEADEAAVLARGGSCAGTVEFGRD HHHCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCCCCCEEEECCCCCEEEHHHHHH VVRDDGTPDRTKTTLKIFPHAGLPRLSMFACQQHRRDLIEFPDWMDHPNGAHGFASATIL HHHCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEE AAPSDQGRVRDWLSVLHGADAVRDTDWGFEVATTNGRWRVVSRATAPALLGKLPDGLASD ECCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEEECCHHHHHHHCCCCCCCCC GAPSVISLDIRCHALSQLRPFVEAGEFVCQDVNGALVLTEVARLGGILLSFHEIPKV CCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA