| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is hipO [H]
Identifier: 99080353
GI number: 99080353
Start: 538014
End: 539153
Strand: Direct
Name: hipO [H]
Synonym: TM1040_0512
Alternate gene names: 99080353
Gene position: 538014-539153 (Clockwise)
Preceding gene: 99080352
Following gene: 99080354
Centisome position: 16.81
GC content: 63.86
Gene sequence:
>1140_bases ATGTTCGACACGACGCATATCGAAGAGGCCATCGCCCTGCGCCATGACCTTCATCGCCACCCAGAGTTGGGGTTCGAAGA GCATCGCACCTCCGAGATCATCGCGGGCCTTTTGCACGGCTGGGGCTGGCGTGTGCATCGTGGTCTCGCAGGGACAGGGG TTGTTGCGCAGATGGGGCAGGGGGAACCGGTCATAGGTCTGCGCGCCGATATTGATGCATTGCCGATGGAGGAGGCTACA GGGCTGGCCTATGCCTCGGGGACGCCCGGCAAGATGCATGCCTGCGGTCATGATGGTCACACCGCGATGTTGCTGCTGGC TGCGCGCAAGATCGCCGAAGAGGGCGTGGCCACAGGCACGGTAACGCTGATCTTCCAACCCGCAGAGGAGAATGATGGCG GCGCACGGGTCATGATTGAACAGGGGCTGTTTCGCGAGTTTCCGGTCGATCAGGTCTATGGCATTCACAACTGGCCGGGG CTCGCGCCAGGGCGCATGGTGGCGCGTGACGACAAGATGATGGCGGCCTTTGCCGTCTTTGAGATCGAGGTTGCCGGGCA GGGTGGGCATGGCGCAATGCCGGAGCAATCGGATGGGGTCATCGCGGCTGCAGCGGCGATGGCGTCGACGTTGCAGGAAA TTCCTGCCCGCGCTTTGTCGCCGCTGGAGCCGGGCGTGGTCTCGGTGACGCAGATCCATTCCGGATCGGCGTGGAATGTC TGCCCTGACCGTGCGGTCTTGCGCGGGACCGCGCGCTGGTTCGATCCCGCTGCTGGCGATACGATTGAGGCCCGTCTGAC ACAGGTGGCGAACGCCTGCGCCGCCGCACAGGGGTGCAGCGCGCGTATTGATTACCAGCGTCGCTATCCCGCGACGATCA ACTCTGCTGTCGAGGCCGCTGCGGCGCGCGCGGTGGCCGCCGAGATGGGGCTTGAGACAGCCAATGTGGCACCGAGCATG GCATCAGAGGATTTTGCCTTTATGCTCAACGAGGTGTCCGGCGCCTATATCTGGCTTGGAGCGGCGCGCGACGGAGAAAA TCCGGGTCTGCACTCAGCCAAATTTGATTTCAATGATGCCGTGCTCCCAGTCGGGGCCGAGTTCTGGGTGCGGCTGGCCC GCCGCCAGCTGGCGACCTGA
Upstream 100 bases:
>100_bases TCTGCCAGGACGTCAATGGGGCCTTGGTGCTGACAGAGGTTGCGCGTCTGGGTGGCATCCTTCTGAGTTTTCACGAAATA CCAAAGGTTTGAGAGAGAGC
Downstream 100 bases:
>100_bases TGGACGCGCTTGAGACAAAGTTCCTGCGCGAGTTTCTCGCGGTGGCGCATGAAGGTTCGATCCGGCGCGCGGCAGACCGG CTCAACGTGGTGCCTTCTGC
Product: peptidase M20D, amidohydrolase
Products: NA
Alternate protein names: Benzoylglycine amidohydrolase; Hippuricase [H]
Number of amino acids: Translated: 379; Mature: 379
Protein sequence:
>379_residues MFDTTHIEEAIALRHDLHRHPELGFEEHRTSEIIAGLLHGWGWRVHRGLAGTGVVAQMGQGEPVIGLRADIDALPMEEAT GLAYASGTPGKMHACGHDGHTAMLLLAARKIAEEGVATGTVTLIFQPAEENDGGARVMIEQGLFREFPVDQVYGIHNWPG LAPGRMVARDDKMMAAFAVFEIEVAGQGGHGAMPEQSDGVIAAAAAMASTLQEIPARALSPLEPGVVSVTQIHSGSAWNV CPDRAVLRGTARWFDPAAGDTIEARLTQVANACAAAQGCSARIDYQRRYPATINSAVEAAAARAVAAEMGLETANVAPSM ASEDFAFMLNEVSGAYIWLGAARDGENPGLHSAKFDFNDAVLPVGAEFWVRLARRQLAT
Sequences:
>Translated_379_residues MFDTTHIEEAIALRHDLHRHPELGFEEHRTSEIIAGLLHGWGWRVHRGLAGTGVVAQMGQGEPVIGLRADIDALPMEEAT GLAYASGTPGKMHACGHDGHTAMLLLAARKIAEEGVATGTVTLIFQPAEENDGGARVMIEQGLFREFPVDQVYGIHNWPG LAPGRMVARDDKMMAAFAVFEIEVAGQGGHGAMPEQSDGVIAAAAAMASTLQEIPARALSPLEPGVVSVTQIHSGSAWNV CPDRAVLRGTARWFDPAAGDTIEARLTQVANACAAAQGCSARIDYQRRYPATINSAVEAAAARAVAAEMGLETANVAPSM ASEDFAFMLNEVSGAYIWLGAARDGENPGLHSAKFDFNDAVLPVGAEFWVRLARRQLAT >Mature_379_residues MFDTTHIEEAIALRHDLHRHPELGFEEHRTSEIIAGLLHGWGWRVHRGLAGTGVVAQMGQGEPVIGLRADIDALPMEEAT GLAYASGTPGKMHACGHDGHTAMLLLAARKIAEEGVATGTVTLIFQPAEENDGGARVMIEQGLFREFPVDQVYGIHNWPG LAPGRMVARDDKMMAAFAVFEIEVAGQGGHGAMPEQSDGVIAAAAAMASTLQEIPARALSPLEPGVVSVTQIHSGSAWNV CPDRAVLRGTARWFDPAAGDTIEARLTQVANACAAAQGCSARIDYQRRYPATINSAVEAAAARAVAAEMGLETANVAPSM ASEDFAFMLNEVSGAYIWLGAARDGENPGLHSAKFDFNDAVLPVGAEFWVRLARRQLAT
Specific function: Required But Not Essential For Aminobenzoyl-Glutamate Utilization. May Participate In Hydrolysis Of Aminobenzoyl- Glutamate To Aminobenzoate, Either Alone Or In Combination With Abgb. [C]
COG id: COG1473
COG function: function code R; Metal-dependent amidase/aminoacylase/carboxypeptidase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M20 family [H]
Homologues:
Organism=Escherichia coli, GI87081880, Length=431, Percent_Identity=28.538283062645, Blast_Score=97, Evalue=2e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017439 - InterPro: IPR010168 - InterPro: IPR002933 - InterPro: IPR011650 [H]
Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]
EC number: =3.5.1.32 [H]
Molecular weight: Translated: 40234; Mature: 40234
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.7 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDTTHIEEAIALRHDLHRHPELGFEEHRTSEIIAGLLHGWGWRVHRGLAGTGVVAQMGQ CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHCCCC GEPVIGLRADIDALPMEEATGLAYASGTPGKMHACGHDGHTAMLLLAARKIAEEGVATGT CCCEEEEECCCCCCCCHHHCCEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEE VTLIFQPAEENDGGARVMIEQGLFREFPVDQVYGIHNWPGLAPGRMVARDDKMMAAFAVF EEEEEEECCCCCCCEEEEEECCCHHHCCHHHCCCCCCCCCCCCCCEEECCCHHEEEEEEE EIEVAGQGGHGAMPEQSDGVIAAAAAMASTLQEIPARALSPLEPGVVSVTQIHSGSAWNV EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC CPDRAVLRGTARWFDPAAGDTIEARLTQVANACAAAQGCSARIDYQRRYPATINSAVEAA CCCHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHH AARAVAAEMGLETANVAPSMASEDFAFMLNEVSGAYIWLGAARDGENPGLHSAKFDFNDA HHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCEECCCCCC VLPVGAEFWVRLARRQLAT EECCCHHHHHHHHHHHHCC >Mature Secondary Structure MFDTTHIEEAIALRHDLHRHPELGFEEHRTSEIIAGLLHGWGWRVHRGLAGTGVVAQMGQ CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCCCCCHHHCCCC GEPVIGLRADIDALPMEEATGLAYASGTPGKMHACGHDGHTAMLLLAARKIAEEGVATGT CCCEEEEECCCCCCCCHHHCCEEEECCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCCEE VTLIFQPAEENDGGARVMIEQGLFREFPVDQVYGIHNWPGLAPGRMVARDDKMMAAFAVF EEEEEEECCCCCCCEEEEEECCCHHHCCHHHCCCCCCCCCCCCCCEEECCCHHEEEEEEE EIEVAGQGGHGAMPEQSDGVIAAAAAMASTLQEIPARALSPLEPGVVSVTQIHSGSAWNV EEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCC CPDRAVLRGTARWFDPAAGDTIEARLTQVANACAAAQGCSARIDYQRRYPATINSAVEAA CCCHHHHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHH AARAVAAEMGLETANVAPSMASEDFAFMLNEVSGAYIWLGAARDGENPGLHSAKFDFNDA HHHHHHHHHCCCHHCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCCCCCCCEECCCCCC VLPVGAEFWVRLARRQLAT EECCCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7730270; 10688204 [H]