| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080308
Identifier: 99080308
GI number: 99080308
Start: 486217
End: 486627
Strand: Reverse
Name: 99080308
Synonym: TM1040_0467
Alternate gene names: NA
Gene position: 486627-486217 (Counterclockwise)
Preceding gene: 99080310
Following gene: 99080307
Centisome position: 15.2
GC content: 58.64
Gene sequence:
>411_bases ATGAGCATCTTTCACCTCGCCTATCACGTCGATGATCTGGACGCCGCACGCCGCTTTTATGGCGAAACGCTTGGCTGCCG GGCCGGGCGCAGCACCGACACCTGGATCGACTTCAACTTCTTTGGCCATCAGATCTCGCTGCACAAGGGCGCGCCCTTTG AAACCGCCAAGACCGGCCGCGTCGGAGAGCATATGGTGCCTATGCCGCATCTCGGTGTGATCCTTCCGCAAGACGAATGG GTACGCCTTGCAGAGCGGCTGCATGACGCAGGCGTCGAATTCGAAATTCCGCCCACCACCCGGTTCAAAGGAGAACCGGG CGAGCAAAGCACCATGTTCTTCTACGACCCGGCTGGAAACCCGATCGAGGTCAAAGGCTTTGCCGATATGGACGGAGTGT TTGCAACATGA
Upstream 100 bases:
>100_bases AGTTTTCCTTACGATTGAAGATCCAAAAACAAGCTAGCATGTGCATGTCCGGGAGCGCTATGGGTAACATGACCCGCACT CAAGACGCAGGAGACGCCGC
Downstream 100 bases:
>100_bases TCAATGCGCTTTTTGCAGCCCGTCCGGAACGGTGGGACACCTATGAGCCAACCCTGCGCGCTGCGTTCGAGGCCGAGGGG CTCGCAGTCGATCTGCGCCA
Product: glyoxalase/bleomycin resistance protein/dioxygenase
Products: NA
Alternate protein names: Glyoxalase Family Protein; Ring-Cleaving Dioxygenase; Dioxygenase; Extradiol Dioxygenase Family Protein; Dioxygenase/Glyoxalase; Glyoxalase/Extradiol Ring-Cleavage Dioxygenase; Glyoxalase Domain Protein; Glyoxalase/Bleomycin Resistance Family Protein; Dioxygenase Of Extradiol Dioxygenase Family Protein; Glyoxalase/Bleomycin Resistance Protein; Dioxygenase Protein; Glyoxalase; Glyoxalase/Bleomycin Resistance; Extradiol Family Dioxygenase; Lactoylglutathione Lyase Protein; Extradiol Dioxygenase
Number of amino acids: Translated: 136; Mature: 135
Protein sequence:
>136_residues MSIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGRVGEHMVPMPHLGVILPQDEW VRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGNPIEVKGFADMDGVFAT
Sequences:
>Translated_136_residues MSIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGRVGEHMVPMPHLGVILPQDEW VRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGNPIEVKGFADMDGVFAT >Mature_135_residues SIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGRVGEHMVPMPHLGVILPQDEWV RLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGNPIEVKGFADMDGVFAT
Specific function: Unknown
COG id: COG3565
COG function: function code R; Predicted dioxygenase of extradiol dioxygenase family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15272; Mature: 15141
Theoretical pI: Translated: 5.17; Mature: 5.17
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGR CCEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCC VGEHMVPMPHLGVILPQDEWVRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGN CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCCC PIEVKGFADMDGVFAT EEEEEECCCCCCEECC >Mature Secondary Structure SIFHLAYHVDDLDAARRFYGETLGCRAGRSTDTWIDFNFFGHQISLHKGAPFETAKTGR CEEEEEEECCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCEEEECCCCCCCCCCCCC VGEHMVPMPHLGVILPQDEWVRLAERLHDAGVEFEIPPTTRFKGEPGEQSTMFFYDPAGN CCCCCCCCCCCEEEECCHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCEEEEECCCCC PIEVKGFADMDGVFAT EEEEEECCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA