| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is glnD [H]
Identifier: 99080287
GI number: 99080287
Start: 462509
End: 465190
Strand: Reverse
Name: glnD [H]
Synonym: TM1040_0446
Alternate gene names: 99080287
Gene position: 465190-462509 (Counterclockwise)
Preceding gene: 99080288
Following gene: 99080286
Centisome position: 14.53
GC content: 59.62
Gene sequence:
>2682_bases TTGGCGCAGGACCATCAGGGCGCGGAGTTCCGTGCCGCTGTTGTTGCGCTCTTGCGAGAGGCCAACAAGTCCGGGCGCAG TGCAATTGCCGAGGCCTTTGAGCTGCAGCCCTTTGCGGCGCGCGAATTGGCGCGGTCTTATACCTATCTGACGGATGGGC TGGTCACATCAGCACAGATGGCCGCTGTTGAGGTGCTGCACCCCATTGCCACCCCCACCACGGGCGAACGGATTTCCGTC TTTGCCGTGGGCGGCTATGGCCGCGGTGAGATGGCGCCGTTTTCCGACGTCGACCTCTTGTTCCTCACCCCCTACAAGAT CACCGCATGGGCCGAGAGCGTGATCGAATCCATGCTTTACATCCTGTGGGACCTGCGCCTGAAGGTCGGCCATTCCAGCA GGACGATCAAAGACTGCATCCGGCTCGGCTCTGAGGATTTCACCATCCGCACCGCCATGCTTGAGCACCGCTTTCTGGCC GGTCACGGACCGCTTGCAGCCGAACTCGAAGCGCGGCTGGCGAAGGATCTCTTCGCCAAGGATTCTGCCGAGTTCATCGA TGCCAAGCTGGCGGAGCGTGATGCGCGCCACCTCAAGCAGGGTGAGCGCTACATGGTCGAGCCCAACGTGAAAGAAGGCA AGGGCGGCCTGCGCGATTTGCAATCGCTCTTCTGGATCGCCAAGTATCTCTACAAGGTGCAGGACGTGGCCGAGCTGGTG CCACTAGGCCTGTTTCGCCCCGAAGAGTTCGACTTCTTTGCCAAGGCCGAGAATTTTCTCTGGGCGGTACGCGCCCATCT GCACCTCAGTGCGGGGCGTGCCACCGAACAGCTGACCTTTGACATGCAGGTGCAGGTCGCCGAACGCATGGGTTATGAGG ACACCTCTGGCCGGCGCGCAGTCGAGGTCTTTATGCAGGACTATTTTCGCCACGCCACGCAGGTGGGCGATGTCACCCGC ATCCTGCTCTCGAAACTGGAAGACAGCCAGCTGAAGAGCGAGCCGCTGCTAGAGCGTATTTTCCGACGCAAGCCGCGCGT GAAACCGGGCTATCGGATTCACCACAACCGGCTCGAGATCGCGGACCCTGAGAGTTTTCTTGAGGACAAGCTGAACCTCC TGCGCATGTTCGAAGAAGCTTTGCGCACGGGGCTCCTGCTGCATCCTGACAGTATGCGACTGGTGCGGGCCAATCTGCAT CTCATCGACGACGAGATGCGCAACTCTCCGGATGCTCAGCGGATCTTCCTCGACCTTCTTCTGAAACACGGCAACCCGGA ACGCGTTCTGCGGCGTATGAACGAACTGGGTGTCCTATCGACCCTGATCCCGGAGTTTGAACCCATCGTGGCGATGATGC AGTTCAACATGTATCACTCCTACACGGTGGACGAGCACACGATTCAGGTGATCTCCAATTTCTCAGCCATTGAGCGGGGC GAACTTGAGAACGAGCTGCCGCTGTCGTCCTCACTGATCAAGCAAGGCGTTAATCGCAAGGTGCTGATCATCGCCATGCT GCTGCATGACATTGGCAAGGGACGCCCGCAGGACCACTCCATTCTTGGCGCGCAGATCGCCCGCAAGGTCGCGCCTCGGC TGGGGCTCAACAAATCCGAATCCGAGACGGTGGAATGGCTGGTGCGCTATCACCTCCTGATGTCGGATACGGCACAGAAA CGCGACATTGCCGACCCGCGCACGGTGCGCGATTTTGCTAAGGCGGTGCAGACGGTCAAACGGCTGGATCTCTTGTTGCT GCTCACGGTCTGCGACATTCGCGGCGTCGGCCCTGATACCTGGAACAACTGGAAAGCGGTTCTCTTGCGCGCGCTTTACA GCCAGACACGCGACGCGATGGAAAACGGGCTTGAGGCATTTAACCGCGAGCACCGCGGCACCGAGGCCAAGAAACGCCTG CGCACGGCCCTGCCCGACTGGGAAAAGGCCGCTGTCAAACGCGAAACCGCCCGCCATTATCCGCCCTATTGGCAGGGGTT GCATGTCACCGCGCATGTGGATTTTGCCGAAATGCTGCGCGAGATCGACGCGCTGGATGATCCATCGGCCATGCTGGTGC GCCTGCATCCGGATGAAGACCGTGATGCCACCCGCGCCTGTTTCGTGATGCCGGATCATCCTGGAATCTTCGCGCGGATA GCGGGCGCACTGGCGCTTGTCGGCGCCAATGTGGTCGACGCGCGCAGTTACACAACGAAGGATGGCTTTGTGACCGATGC CTTCTGGATTCAGGATGCAGACGGTCACCCGTTCGAGGCCTCCCGCCTCCCGCGCCTGCGCAGCATGATCGAAAAGACAC TGCGTGGCGAAGTGATCGCCCGCGATGCGCTGAAATCGCGTGACAAGATCAAAAAGCGCGAACGCGCCTTCCGTGTGCCG ACCCATATCACCTTTGATAACGATGGCTCCGATATTTACACCATTATCGAAGTGGACACCCGCGATCGCCCCGGCCTGCT CTATGATCTGGCGCGCACGCTTGCGGCCTCGAATGTCTATATTGCCAATGCGGTGATCGCGACCTACGGCGAGCAGGTGG TAGACAGCTTCTATGTGAAAGACATGTTTGGCTTGAAATATCACTCGGCCTCCAAGCAACAGTCGCTGGAGAAAAAGCTG CGCGAAGCCATCGTAGACGGTGCAAAACGGGCGGATACATGA
Upstream 100 bases:
>100_bases CAACACTCTCGACAAAACCCATCCTGAACCTCTGGGGTCGCTCATCTGCGACCCCAGTGCGATTTTCGATGCCGATGCAA TTCGGCTTCGGATCAAGGAG
Downstream 100 bases:
>100_bases AGCCGATCAAACTGATGTCCGGCTTTCTGACCGTCGGCTTCTGGACACTCGCAAGCCGGGTTCTCGGGTTTCTGCGCGAG ATCCTGATTGCGGCCTATAT
Product: PII uridylyl-transferase
Products: NA
Alternate protein names: PII uridylyl-transferase; UTase; Uridylyl-removing enzyme [H]
Number of amino acids: Translated: 893; Mature: 892
Protein sequence:
>893_residues MAQDHQGAEFRAAVVALLREANKSGRSAIAEAFELQPFAARELARSYTYLTDGLVTSAQMAAVEVLHPIATPTTGERISV FAVGGYGRGEMAPFSDVDLLFLTPYKITAWAESVIESMLYILWDLRLKVGHSSRTIKDCIRLGSEDFTIRTAMLEHRFLA GHGPLAAELEARLAKDLFAKDSAEFIDAKLAERDARHLKQGERYMVEPNVKEGKGGLRDLQSLFWIAKYLYKVQDVAELV PLGLFRPEEFDFFAKAENFLWAVRAHLHLSAGRATEQLTFDMQVQVAERMGYEDTSGRRAVEVFMQDYFRHATQVGDVTR ILLSKLEDSQLKSEPLLERIFRRKPRVKPGYRIHHNRLEIADPESFLEDKLNLLRMFEEALRTGLLLHPDSMRLVRANLH LIDDEMRNSPDAQRIFLDLLLKHGNPERVLRRMNELGVLSTLIPEFEPIVAMMQFNMYHSYTVDEHTIQVISNFSAIERG ELENELPLSSSLIKQGVNRKVLIIAMLLHDIGKGRPQDHSILGAQIARKVAPRLGLNKSESETVEWLVRYHLLMSDTAQK RDIADPRTVRDFAKAVQTVKRLDLLLLLTVCDIRGVGPDTWNNWKAVLLRALYSQTRDAMENGLEAFNREHRGTEAKKRL RTALPDWEKAAVKRETARHYPPYWQGLHVTAHVDFAEMLREIDALDDPSAMLVRLHPDEDRDATRACFVMPDHPGIFARI AGALALVGANVVDARSYTTKDGFVTDAFWIQDADGHPFEASRLPRLRSMIEKTLRGEVIARDALKSRDKIKKRERAFRVP THITFDNDGSDIYTIIEVDTRDRPGLLYDLARTLAASNVYIANAVIATYGEQVVDSFYVKDMFGLKYHSASKQQSLEKKL REAIVDGAKRADT
Sequences:
>Translated_893_residues MAQDHQGAEFRAAVVALLREANKSGRSAIAEAFELQPFAARELARSYTYLTDGLVTSAQMAAVEVLHPIATPTTGERISV FAVGGYGRGEMAPFSDVDLLFLTPYKITAWAESVIESMLYILWDLRLKVGHSSRTIKDCIRLGSEDFTIRTAMLEHRFLA GHGPLAAELEARLAKDLFAKDSAEFIDAKLAERDARHLKQGERYMVEPNVKEGKGGLRDLQSLFWIAKYLYKVQDVAELV PLGLFRPEEFDFFAKAENFLWAVRAHLHLSAGRATEQLTFDMQVQVAERMGYEDTSGRRAVEVFMQDYFRHATQVGDVTR ILLSKLEDSQLKSEPLLERIFRRKPRVKPGYRIHHNRLEIADPESFLEDKLNLLRMFEEALRTGLLLHPDSMRLVRANLH LIDDEMRNSPDAQRIFLDLLLKHGNPERVLRRMNELGVLSTLIPEFEPIVAMMQFNMYHSYTVDEHTIQVISNFSAIERG ELENELPLSSSLIKQGVNRKVLIIAMLLHDIGKGRPQDHSILGAQIARKVAPRLGLNKSESETVEWLVRYHLLMSDTAQK RDIADPRTVRDFAKAVQTVKRLDLLLLLTVCDIRGVGPDTWNNWKAVLLRALYSQTRDAMENGLEAFNREHRGTEAKKRL RTALPDWEKAAVKRETARHYPPYWQGLHVTAHVDFAEMLREIDALDDPSAMLVRLHPDEDRDATRACFVMPDHPGIFARI AGALALVGANVVDARSYTTKDGFVTDAFWIQDADGHPFEASRLPRLRSMIEKTLRGEVIARDALKSRDKIKKRERAFRVP THITFDNDGSDIYTIIEVDTRDRPGLLYDLARTLAASNVYIANAVIATYGEQVVDSFYVKDMFGLKYHSASKQQSLEKKL REAIVDGAKRADT >Mature_892_residues AQDHQGAEFRAAVVALLREANKSGRSAIAEAFELQPFAARELARSYTYLTDGLVTSAQMAAVEVLHPIATPTTGERISVF AVGGYGRGEMAPFSDVDLLFLTPYKITAWAESVIESMLYILWDLRLKVGHSSRTIKDCIRLGSEDFTIRTAMLEHRFLAG HGPLAAELEARLAKDLFAKDSAEFIDAKLAERDARHLKQGERYMVEPNVKEGKGGLRDLQSLFWIAKYLYKVQDVAELVP LGLFRPEEFDFFAKAENFLWAVRAHLHLSAGRATEQLTFDMQVQVAERMGYEDTSGRRAVEVFMQDYFRHATQVGDVTRI LLSKLEDSQLKSEPLLERIFRRKPRVKPGYRIHHNRLEIADPESFLEDKLNLLRMFEEALRTGLLLHPDSMRLVRANLHL IDDEMRNSPDAQRIFLDLLLKHGNPERVLRRMNELGVLSTLIPEFEPIVAMMQFNMYHSYTVDEHTIQVISNFSAIERGE LENELPLSSSLIKQGVNRKVLIIAMLLHDIGKGRPQDHSILGAQIARKVAPRLGLNKSESETVEWLVRYHLLMSDTAQKR DIADPRTVRDFAKAVQTVKRLDLLLLLTVCDIRGVGPDTWNNWKAVLLRALYSQTRDAMENGLEAFNREHRGTEAKKRLR TALPDWEKAAVKRETARHYPPYWQGLHVTAHVDFAEMLREIDALDDPSAMLVRLHPDEDRDATRACFVMPDHPGIFARIA GALALVGANVVDARSYTTKDGFVTDAFWIQDADGHPFEASRLPRLRSMIEKTLRGEVIARDALKSRDKIKKRERAFRVPT HITFDNDGSDIYTIIEVDTRDRPGLLYDLARTLAASNVYIANAVIATYGEQVVDSFYVKDMFGLKYHSASKQQSLEKKLR EAIVDGAKRADT
Specific function: Modifies, by uridylylation or deuridylylation the PII (glnB) regulatory protein [H]
COG id: COG2844
COG function: function code O; UTP:GlnB (protein PII) uridylyltransferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glnD family [H]
Homologues:
Organism=Escherichia coli, GI1786363, Length=825, Percent_Identity=33.5757575757576, Blast_Score=409, Evalue=1e-115,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR010043 - InterPro: IPR003607 - InterPro: IPR002934 - InterPro: IPR013546 [H]
Pfam domain/function: PF01842 ACT; PF08335 GlnD_UR_UTase; PF01909 NTP_transf_2 [H]
EC number: =2.7.7.59 [H]
Molecular weight: Translated: 101437; Mature: 101305
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAQDHQGAEFRAAVVALLREANKSGRSAIAEAFELQPFAARELARSYTYLTDGLVTSAQM CCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AAVEVLHPIATPTTGERISVFAVGGYGRGEMAPFSDVDLLFLTPYKITAWAESVIESMLY HHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH ILWDLRLKVGHSSRTIKDCIRLGSEDFTIRTAMLEHRFLAGHGPLAAELEARLAKDLFAK HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC DSAEFIDAKLAERDARHLKQGERYMVEPNVKEGKGGLRDLQSLFWIAKYLYKVQDVAELV CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH PLGLFRPEEFDFFAKAENFLWAVRAHLHLSAGRATEQLTFDMQVQVAERMGYEDTSGRRA HCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHEEEHHHHHHHHHCCCCCCCCHHH VEVFMQDYFRHATQVGDVTRILLSKLEDSQLKSEPLLERIFRRKPRVKPGYRIHHNRLEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEECCEECC ADPESFLEDKLNLLRMFEEALRTGLLLHPDSMRLVRANLHLIDDEMRNSPDAQRIFLDLL CCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHEECHHHCCCCHHHHHHHHHH LKHGNPERVLRRMNELGVLSTLIPEFEPIVAMMQFNMYHSYTVDEHTIQVISNFSAIERG HHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC ELENELPLSSSLIKQGVNRKVLIIAMLLHDIGKGRPQDHSILGAQIARKVAPRLGLNKSE CCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCH SETVEWLVRYHLLMSDTAQKRDIADPRTVRDFAKAVQTVKRLDLLLLLTVCDIRGVGPDT HHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC WNNWKAVLLRALYSQTRDAMENGLEAFNREHRGTEAKKRLRTALPDWEKAAVKRETARHY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC PPYWQGLHVTAHVDFAEMLREIDALDDPSAMLVRLHPDEDRDATRACFVMPDHPGIFARI CCCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHH AGALALVGANVVDARSYTTKDGFVTDAFWIQDADGHPFEASRLPRLRSMIEKTLRGEVIA HHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHCCHHHH RDALKSRDKIKKRERAFRVPTHITFDNDGSDIYTIIEVDTRDRPGLLYDLARTLAASNVY HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCH IANAVIATYGEQVVDSFYVKDMFGLKYHSASKQQSLEKKLREAIVDGAKRADT HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCHHCCCC >Mature Secondary Structure AQDHQGAEFRAAVVALLREANKSGRSAIAEAFELQPFAARELARSYTYLTDGLVTSAQM CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH AAVEVLHPIATPTTGERISVFAVGGYGRGEMAPFSDVDLLFLTPYKITAWAESVIESMLY HHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHH ILWDLRLKVGHSSRTIKDCIRLGSEDFTIRTAMLEHRFLAGHGPLAAELEARLAKDLFAK HHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC DSAEFIDAKLAERDARHLKQGERYMVEPNVKEGKGGLRDLQSLFWIAKYLYKVQDVAELV CCHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH PLGLFRPEEFDFFAKAENFLWAVRAHLHLSAGRATEQLTFDMQVQVAERMGYEDTSGRRA HCCCCCCCCCHHHHHHHHHHHHHHHHHEECCCCCCHHEEEHHHHHHHHHCCCCCCCCHHH VEVFMQDYFRHATQVGDVTRILLSKLEDSQLKSEPLLERIFRRKPRVKPGYRIHHNRLEI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCEEECCEECC ADPESFLEDKLNLLRMFEEALRTGLLLHPDSMRLVRANLHLIDDEMRNSPDAQRIFLDLL CCHHHHHHHHHHHHHHHHHHHHCCEEECCCCHHHHHHHHHEECHHHCCCCHHHHHHHHHH LKHGNPERVLRRMNELGVLSTLIPEFEPIVAMMQFNMYHSYTVDEHTIQVISNFSAIERG HHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHC ELENELPLSSSLIKQGVNRKVLIIAMLLHDIGKGRPQDHSILGAQIARKVAPRLGLNKSE CCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCH SETVEWLVRYHLLMSDTAQKRDIADPRTVRDFAKAVQTVKRLDLLLLLTVCDIRGVGPDT HHHHHHHHHHHHHHHCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC WNNWKAVLLRALYSQTRDAMENGLEAFNREHRGTEAKKRLRTALPDWEKAAVKRETARHY CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHCC PPYWQGLHVTAHVDFAEMLREIDALDDPSAMLVRLHPDEDRDATRACFVMPDHPGIFARI CCCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHH AGALALVGANVVDARSYTTKDGFVTDAFWIQDADGHPFEASRLPRLRSMIEKTLRGEVIA HHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHCCHHHHHHHHHHHCCHHHH RDALKSRDKIKKRERAFRVPTHITFDNDGSDIYTIIEVDTRDRPGLLYDLARTLAASNVY HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCCH IANAVIATYGEQVVDSFYVKDMFGLKYHSASKQQSLEKKLREAIVDGAKRADT HHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHHHHHHHHHHHHHCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA