| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080266
Identifier: 99080266
GI number: 99080266
Start: 437482
End: 437877
Strand: Direct
Name: 99080266
Synonym: TM1040_0425
Alternate gene names: NA
Gene position: 437482-437877 (Clockwise)
Preceding gene: 99080265
Following gene: 99080276
Centisome position: 13.67
GC content: 60.35
Gene sequence:
>396_bases ATGAGTGAAAAAGATCAGAGACGACCAAGCGGTCTGCGCGGGGCCGAGTTTCTTGGTGTGGCGACAGCCTTGATATTGGC GGTACTGGCGGGGCAGGGGCAGGCAAGGCTGCCCCATGACACGGGTTTTGCCGCTCTTCAGGGGCCGGGCGCGACGCCGC TCAGCCGGGATCGCCGTGTAGTGAAGGCGCCTATGCCGCAAATGTCGCCCCTCAGTTGGCGGTGCCAGTTGGTCTGCGAC GAGACTGGCCATGTGCGCCAATCCTGCCTGATGCTTGCAGACCCGCGATTGAGCAGCATTGGGCAGCGGCTTGACTATCT CTCAAAAAACAAATCCGCGCTCAAATCCCTTGGTGATCTGGGATTGAGCGATCTGACTGAAACGCCCACCTGCTAG
Upstream 100 bases:
>100_bases TCACGCTGTTCTCGCGTTGGGGTGACGCAATTGGGTGAGTGACCTTTGCATGTATCAGGCCATTGGACCGGTGCCGTGCA AGGGTAGGGGATAGTAATAC
Downstream 100 bases:
>100_bases GTGGCGCGCCCCAGCCCGGGGCGCGCGAGGTCAAATCTGAGTCGTGTAGGAACGGAGCGCCTCGCGTGTTCCTTTGCTCC AGATCAGTGCATGCCAGTGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 131; Mature: 130
Protein sequence:
>131_residues MSEKDQRRPSGLRGAEFLGVATALILAVLAGQGQARLPHDTGFAALQGPGATPLSRDRRVVKAPMPQMSPLSWRCQLVCD ETGHVRQSCLMLADPRLSSIGQRLDYLSKNKSALKSLGDLGLSDLTETPTC
Sequences:
>Translated_131_residues MSEKDQRRPSGLRGAEFLGVATALILAVLAGQGQARLPHDTGFAALQGPGATPLSRDRRVVKAPMPQMSPLSWRCQLVCD ETGHVRQSCLMLADPRLSSIGQRLDYLSKNKSALKSLGDLGLSDLTETPTC >Mature_130_residues SEKDQRRPSGLRGAEFLGVATALILAVLAGQGQARLPHDTGFAALQGPGATPLSRDRRVVKAPMPQMSPLSWRCQLVCDE TGHVRQSCLMLADPRLSSIGQRLDYLSKNKSALKSLGDLGLSDLTETPTC
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14057; Mature: 13926
Theoretical pI: Translated: 9.04; Mature: 9.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKDQRRPSGLRGAEFLGVATALILAVLAGQGQARLPHDTGFAALQGPGATPLSRDRRV CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCEE VKAPMPQMSPLSWRCQLVCDETGHVRQSCLMLADPRLSSIGQRLDYLSKNKSALKSLGDL EECCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHC GLSDLTETPTC CCHHCCCCCCC >Mature Secondary Structure SEKDQRRPSGLRGAEFLGVATALILAVLAGQGQARLPHDTGFAALQGPGATPLSRDRRV CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCCCCCCCCEE VKAPMPQMSPLSWRCQLVCDETGHVRQSCLMLADPRLSSIGQRLDYLSKNKSALKSLGDL EECCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHC GLSDLTETPTC CCHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA