| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
Click here to switch to the map view.
The map label for this gene is 99080265
Identifier: 99080265
GI number: 99080265
Start: 435852
End: 437273
Strand: Direct
Name: 99080265
Synonym: TM1040_0424
Alternate gene names: NA
Gene position: 435852-437273 (Clockwise)
Preceding gene: 99080264
Following gene: 99080266
Centisome position: 13.62
GC content: 62.45
Gene sequence:
>1422_bases ATGACTGTTGAATTCGACGCGGCGCGCCTTGGTCCCATCCTGTACTACCGAGGTCTGGAGGGCGACGCGCTGCAGCTGGC GGCGATGGTCATGCTACCGATTGGAGAGCGCCCCGAAACTCTGCGTACGGATGCGGGGGACCACGCGCCGACGCTCTTGC GCGAGATTGGTCGCAGCGCGGTTTGGCGGTATGATTTCGGTCTGACGCCCAGCTGCGGCAGCTATCGCCTTGGGGATCAG AGCTACGACGTGCAGACTGATCTTCATGGCGATATGCGCATTGCCTTTGCGTCTTGTAATGGCGAGGAAAAAGGTGATCT CGACCGGGATCAGGAAGAGCGCAACCGCATGTGGGCGCATATGTGTGCCGAACACCGCCGTGCGCCTTTTGCGCTGTTGT TGCAAGGGGGCGACCAGATCTATGCGGATGAGGCGACAGAGGGCCATCCCCTGAGCGAAGACTGGCCGGACAAGGCCGGG CGTCCGCGCAACGCAGAAGAGCTGAAAGACCTGGCCGATCATCTCAGGCTGCGGTTTGCGGAGCGGTATGTGCAGGCGCT CTTTGGCGAGGCGCCAAGCTGGATCATGGCGCGGGTGCCGACACTGGCGATCTGGGACGATCATGACATCTGCGATGGCT GGGGTTCACTCTACCGCAGCAAGACCCACTCCGAGGTGGGGCAGTGTCTCTATGCCGTGGCGCGTGAAATGTATCTCTTG TTTCAGCACGCCGCCGTGGAAGGCGACATTCCGGATCTCTTTATGGACGAGACGGGCACCTCGCTGTCATGGCAGCGCGC CTTGCCGGGGGTGAAGCTGCTGGCGCCGGATCTGCGCGCCGAGCGCGGCCGCCGTCAGGTTCTGGGCGCCTACGGGTGGT CTGCGGTCGAGGCGATGAAGCCGGGATCGGAACATACTTTTGTGATTTCCAGCGTACCGCTCCTGGGGCCGCGGTTGTCA TTGGTGGAGGGGCTCATGCTGATGATCCCGACCATGCAGAAATACGAGGACGATCTGCGCGATCAGTGGCAAAGCCGCGC GCACCGCAAGGAATGGATACGCATGCTCAAGCAGGTCATTGCATGGCGCGAGGAGGCGCCGGTGACGATCCTGTCTGGCG AGATCCACCTCGCCACGCGCGCCGAAATGGGTCCTGACGAGACGCGCGTGCATCAGCTTGTGGCCTCGGGCATTGCCCAC CGTGCGCCGCCGCAGAGCTATGCCCGAAGTCTGGGCACTTTGGCGGGACTCGGTGATGCGCCTGTGAGCGGGCATCCGAT CCGTATTCATCCGCTTCCGGGTCAAAGCCAACGCTATACGGCGGAGCGCAACTATCTTGAGCTCAGGCGCACGCATGGAA AATGGCACGCGGTCTGGCACCTCGAAGAGAGCGGGGACACAGTCCCGATGGTTCTGGAGTAA
Upstream 100 bases:
>100_bases ACCCCCCCTCGGGGCGCCGGGGATTGGCGCGGGTTACATCGCCGCACTCCATACCCTATCTCTGCACTGAAGGACGGCAC GGATCTGAAATGAGGGACAC
Downstream 100 bases:
>100_bases CAGCAGCGGGCGGGTCGAGATCTTCACCTTTGATAAATTTTTCTGAACTTTTCCTTTCTTTTCAGGCCGTATCGTGGGGT CTGACAGGGAGACATTAATC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 473; Mature: 472
Protein sequence:
>473_residues MTVEFDAARLGPILYYRGLEGDALQLAAMVMLPIGERPETLRTDAGDHAPTLLREIGRSAVWRYDFGLTPSCGSYRLGDQ SYDVQTDLHGDMRIAFASCNGEEKGDLDRDQEERNRMWAHMCAEHRRAPFALLLQGGDQIYADEATEGHPLSEDWPDKAG RPRNAEELKDLADHLRLRFAERYVQALFGEAPSWIMARVPTLAIWDDHDICDGWGSLYRSKTHSEVGQCLYAVAREMYLL FQHAAVEGDIPDLFMDETGTSLSWQRALPGVKLLAPDLRAERGRRQVLGAYGWSAVEAMKPGSEHTFVISSVPLLGPRLS LVEGLMLMIPTMQKYEDDLRDQWQSRAHRKEWIRMLKQVIAWREEAPVTILSGEIHLATRAEMGPDETRVHQLVASGIAH RAPPQSYARSLGTLAGLGDAPVSGHPIRIHPLPGQSQRYTAERNYLELRRTHGKWHAVWHLEESGDTVPMVLE
Sequences:
>Translated_473_residues MTVEFDAARLGPILYYRGLEGDALQLAAMVMLPIGERPETLRTDAGDHAPTLLREIGRSAVWRYDFGLTPSCGSYRLGDQ SYDVQTDLHGDMRIAFASCNGEEKGDLDRDQEERNRMWAHMCAEHRRAPFALLLQGGDQIYADEATEGHPLSEDWPDKAG RPRNAEELKDLADHLRLRFAERYVQALFGEAPSWIMARVPTLAIWDDHDICDGWGSLYRSKTHSEVGQCLYAVAREMYLL FQHAAVEGDIPDLFMDETGTSLSWQRALPGVKLLAPDLRAERGRRQVLGAYGWSAVEAMKPGSEHTFVISSVPLLGPRLS LVEGLMLMIPTMQKYEDDLRDQWQSRAHRKEWIRMLKQVIAWREEAPVTILSGEIHLATRAEMGPDETRVHQLVASGIAH RAPPQSYARSLGTLAGLGDAPVSGHPIRIHPLPGQSQRYTAERNYLELRRTHGKWHAVWHLEESGDTVPMVLE >Mature_472_residues TVEFDAARLGPILYYRGLEGDALQLAAMVMLPIGERPETLRTDAGDHAPTLLREIGRSAVWRYDFGLTPSCGSYRLGDQS YDVQTDLHGDMRIAFASCNGEEKGDLDRDQEERNRMWAHMCAEHRRAPFALLLQGGDQIYADEATEGHPLSEDWPDKAGR PRNAEELKDLADHLRLRFAERYVQALFGEAPSWIMARVPTLAIWDDHDICDGWGSLYRSKTHSEVGQCLYAVAREMYLLF QHAAVEGDIPDLFMDETGTSLSWQRALPGVKLLAPDLRAERGRRQVLGAYGWSAVEAMKPGSEHTFVISSVPLLGPRLSL VEGLMLMIPTMQKYEDDLRDQWQSRAHRKEWIRMLKQVIAWREEAPVTILSGEIHLATRAEMGPDETRVHQLVASGIAHR APPQSYARSLGTLAGLGDAPVSGHPIRIHPLPGQSQRYTAERNYLELRRTHGKWHAVWHLEESGDTVPMVLE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Saccharomyces cerevisiae, GI6321705, Length=405, Percent_Identity=24.4444444444444, Blast_Score=94, Evalue=4e-20,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 53326; Mature: 53195
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVEFDAARLGPILYYRGLEGDALQLAAMVMLPIGERPETLRTDAGDHAPTLLREIGRSA CCEECCHHHHCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHCHHH VWRYDFGLTPSCGSYRLGDQSYDVQTDLHGDMRIAFASCNGEEKGDLDRDQEERNRMWAH EEEECCCCCCCCCCEECCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH MCAEHRRAPFALLLQGGDQIYADEATEGHPLSEDWPDKAGRPRNAEELKDLADHLRLRFA HHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ERYVQALFGEAPSWIMARVPTLAIWDDHDICDGWGSLYRSKTHSEVGQCLYAVAREMYLL HHHHHHHHCCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FQHAAVEGDIPDLFMDETGTSLSWQRALPGVKLLAPDLRAERGRRQVLGAYGWSAVEAMK HHHHHCCCCCCCHHHCCCCCCCCHHHCCCCCEEECCHHHHHCCHHHHHHHCCHHHHHHCC PGSEHTFVISSVPLLGPRLSLVEGLMLMIPTMQKYEDDLRDQWQSRAHRKEWIRMLKQVI CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWREEAPVTILSGEIHLATRAEMGPDETRVHQLVASGIAHRAPPQSYARSLGTLAGLGDA HHCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC PVSGHPIRIHPLPGQSQRYTAERNYLELRRTHGKWHAVWHLEESGDTVPMVLE CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEC >Mature Secondary Structure TVEFDAARLGPILYYRGLEGDALQLAAMVMLPIGERPETLRTDAGDHAPTLLREIGRSA CEECCHHHHCCEEEEECCCCCHHHHHHHHHHCCCCCCCHHCCCCCCCHHHHHHHHCHHH VWRYDFGLTPSCGSYRLGDQSYDVQTDLHGDMRIAFASCNGEEKGDLDRDQEERNRMWAH EEEECCCCCCCCCCEECCCCCCCEEECCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHH MCAEHRRAPFALLLQGGDQIYADEATEGHPLSEDWPDKAGRPRNAEELKDLADHLRLRFA HHHHHCCCCEEEEEECCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH ERYVQALFGEAPSWIMARVPTLAIWDDHDICDGWGSLYRSKTHSEVGQCLYAVAREMYLL HHHHHHHHCCCCCHHHHHCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FQHAAVEGDIPDLFMDETGTSLSWQRALPGVKLLAPDLRAERGRRQVLGAYGWSAVEAMK HHHHHCCCCCCCHHHCCCCCCCCHHHCCCCCEEECCHHHHHCCHHHHHHHCCHHHHHHCC PGSEHTFVISSVPLLGPRLSLVEGLMLMIPTMQKYEDDLRDQWQSRAHRKEWIRMLKQVI CCCCCEEEEECCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AWREEAPVTILSGEIHLATRAEMGPDETRVHQLVASGIAHRAPPQSYARSLGTLAGLGDA HHCCCCCEEEEECCEEEEECCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCC PVSGHPIRIHPLPGQSQRYTAERNYLELRRTHGKWHAVWHLEESGDTVPMVLE CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA