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The map label for this gene is chrR [H]

Identifier: 99080257

GI number: 99080257

Start: 426222

End: 426857

Strand: Direct

Name: chrR [H]

Synonym: TM1040_0416

Alternate gene names: 99080257

Gene position: 426222-426857 (Clockwise)

Preceding gene: 99080256

Following gene: 99080259

Centisome position: 13.32

GC content: 59.43

Gene sequence:

>636_bases
ATGACGGGTATTACGCACCATATCCCTGACGAGTTGCTGATAGCCTACGCGGCGGGCAGCTTGACAAAGGCGTTTTCACT
TGTGGTCGCCGCGCATGTTTCCATGTGTGACGAATGCCGCGCGCGCCTTGGCGCGCATGAGGCGCTCGGTGGCGCGCTCC
TTGATGATATGCCCGTGGCCGAGGTTTCGGCGGATATGAAGGGACGGCTGTTTGACGCGCTCGACGATCCGGTTGCCCGA
GAAAAGCGCTATGACCGGGCGGGGATTTTTCCTGCACCTGTCATGGAAGCCTTGGGGGGGCTGCCGCCAAAGTGGAAGCC
CCTCGGGCTCGGTGTGCGGCAGATGATCCTCGATCATGATCGCAGTGGCAGCGTGCGGCTTCTCTACATTCCGGCTGGAC
AAGGGGTTCCGGATCATGGGCACAACGGGCTGGAATTGACCTTGGTACTGCAGGGCGCGTTTTATGACGAGACCGGACAT
TTTGGTGTCGGTGATCTGGAGGTTGCAGATGGGGATCTGGAACATGAACCCGTCGCTGCTGATGGTCCTGCTTGCATCTG
TCTTGCTGCGACGGATGCCTCGCTTCGGTTCCGCTCTTTTGTGCCTCGCCTTTTGCAGCCGATTTTCCGGATCTGA

Upstream 100 bases:

>100_bases
AGATCAAGGCCGAGACCGGTCTGCCGCTGGGAACCATCAAGTCGCGCATCCGGCTGGGGCTGGAGAAACTGCGTCATGAA
TTGAAGGGAACGCAACGCTC

Downstream 100 bases:

>100_bases
GCCTTCAGGGCTCAGGTGGTGACGGGAGCGAGGCGCTGCCTCGCGCTCCGGGATATTTTTGGTTAGAAGAAAACGATGAC
ATGAAGAAGGGCCGCGGCAT

Product: anti-ECFsigma factor, ChrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MTGITHHIPDELLIAYAAGSLTKAFSLVVAAHVSMCDECRARLGAHEALGGALLDDMPVAEVSADMKGRLFDALDDPVAR
EKRYDRAGIFPAPVMEALGGLPPKWKPLGLGVRQMILDHDRSGSVRLLYIPAGQGVPDHGHNGLELTLVLQGAFYDETGH
FGVGDLEVADGDLEHEPVAADGPACICLAATDASLRFRSFVPRLLQPIFRI

Sequences:

>Translated_211_residues
MTGITHHIPDELLIAYAAGSLTKAFSLVVAAHVSMCDECRARLGAHEALGGALLDDMPVAEVSADMKGRLFDALDDPVAR
EKRYDRAGIFPAPVMEALGGLPPKWKPLGLGVRQMILDHDRSGSVRLLYIPAGQGVPDHGHNGLELTLVLQGAFYDETGH
FGVGDLEVADGDLEHEPVAADGPACICLAATDASLRFRSFVPRLLQPIFRI
>Mature_210_residues
TGITHHIPDELLIAYAAGSLTKAFSLVVAAHVSMCDECRARLGAHEALGGALLDDMPVAEVSADMKGRLFDALDDPVARE
KRYDRAGIFPAPVMEALGGLPPKWKPLGLGVRQMILDHDRSGSVRLLYIPAGQGVPDHGHNGLELTLVLQGAFYDETGHF
GVGDLEVADGDLEHEPVAADGPACICLAATDASLRFRSFVPRLLQPIFRI

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22585; Mature: 22454

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGITHHIPDELLIAYAAGSLTKAFSLVVAAHVSMCDECRARLGAHEALGGALLDDMPVA
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHCCCCHH
EVSADMKGRLFDALDDPVAREKRYDRAGIFPAPVMEALGGLPPKWKPLGLGVRQMILDHD
HHCCCHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
RSGSVRLLYIPAGQGVPDHGHNGLELTLVLQGAFYDETGHFGVGDLEVADGDLEHEPVAA
CCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECEECCCCCCCCCCEEECCCCCCCCCCCC
DGPACICLAATDASLRFRSFVPRLLQPIFRI
CCCEEEEEEECCCHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TGITHHIPDELLIAYAAGSLTKAFSLVVAAHVSMCDECRARLGAHEALGGALLDDMPVA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCCHHHCCCCHH
EVSADMKGRLFDALDDPVAREKRYDRAGIFPAPVMEALGGLPPKWKPLGLGVRQMILDHD
HHCCCHHHHHHHHHCCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHCC
RSGSVRLLYIPAGQGVPDHGHNGLELTLVLQGAFYDETGHFGVGDLEVADGDLEHEPVAA
CCCCEEEEEEECCCCCCCCCCCCEEEEEEEEECEECCCCCCCCCCEEECCCCCCCCCCCC
DGPACICLAATDASLRFRSFVPRLLQPIFRI
CCCEEEEEEECCCHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]