Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

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The map label for this gene is 99080214

Identifier: 99080214

GI number: 99080214

Start: 382535

End: 383410

Strand: Reverse

Name: 99080214

Synonym: TM1040_0373

Alternate gene names: NA

Gene position: 383410-382535 (Counterclockwise)

Preceding gene: 99080215

Following gene: 99080208

Centisome position: 11.98

GC content: 62.21

Gene sequence:

>876_bases
ATGCGTATTTTCCTCTTGGGGGCCACGGGCTCTATCGGCACTGCCCTCCTGCCCGAACTCTTGGCCGCGGGGCATCATGT
CACCGCACTTTGCCGTTCTGACATAGCGGCCAGGACCGTAGATGCGCAGGGTGCCAAAGTGTGTCGCGGCGACATGCGCG
CGCCTCAGGATTGGGCCCCTGCGCTTGAGGGCCAGGATGTGGTGATCCATGCCGCCATCACCTTCGATGAAGAGATGGCC
GCCGCCGACCGTCAGGTTGTCGACACGCTGATCAACGCGGCCCAGACGCGCGCTGCTGCCCTGCGCGTGATCTATACCGG
GGGATGCTGGCTCTACGGTGACACCCGAGGTCGAATTCTACACGAGGCAGACGGGTTTAACCCAATTCCTGCATTTCGCC
CCTTTCTGAATCAGGCCGAACGTCTGATGAGGGAGCCCACTCTCTCCACAGCCACACTGCATCCAGCAATGGTGTACCAT
CAAGAAGGCGGCGTCTTTGATCGCATGCTTGCAGACATCGCGGCAGAGCGCCCGATTGAACTGTGGGGGAACGCCAGCAT
CCGCTGGCCACTGATCCACCGCAAAGATCTCGCGGTTGCCTATCGGTTGCTCGCAGAGGACCCAGACCTCACCGGGCATT
TCAACGCGGTTGCCCAATGCGGGGTCGAGATCGGCGCAATCGCCGCAACGCTCGCCCGTGCCCACGGCCATGATGAAACC
TTGAATTGCCTCTCTCGCGCCAAGGCTCAGGCACTTGCAGGGCACTGGGCGGAGGGGCCAATGCTCGACCAGAGGCTCAG
TGGAGCGCGCCTTCGAGCAGCGACGGGTTGGGTCCCGCAGTATCAAGATCTGGAACAGTGCTTCCCGCCCCTCTGA

Upstream 100 bases:

>100_bases
GGATTGCCCCAAAATCATTCCCGTCGCTGAAATACCGCTTGCCCTCAATCATGGTTGAGATCCGACAACATCCCAGAGAC
GTTTTACCGGAGACAAAACC

Downstream 100 bases:

>100_bases
GCGCCTGAAAGCCACCAAATCCACGTTGGAACAGTCTTATCGAACTCCAGCCCCCGTACTACAAGGGTTCCTCAGCACAG
ATAGTGTCCTGGTTCATCTT

Product: NAD-dependent epimerase/dehydratase

Products: NA

Alternate protein names: Oxidoreductase; NAD Dependent Epimerase/Dehydratase; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Polysaccharide Synthesis Protein; Dyhydroflavanol-4-Reductase; Epimerase/Dehydratase; NAD Dependent Epimerase/Dehydratase Family Protein; Nucleoside-Diphosphate-Sugar Epimerase Dehydratase Protein; Dyhydroflavanol-4-Reductas; Dehydratase; Nucleoside-Diphosphate-Sugar Epimerases; NAD-Dependent Epimerase/Dehydratase Family Protein; UDP-Glucose 4-Epimerase; 3-Beta Hydroxysteroid Dehydrogenase; Nucleoside-Diphosphate-Sugar Epimerase

Number of amino acids: Translated: 291; Mature: 291

Protein sequence:

>291_residues
MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAPALEGQDVVIHAAITFDEEMA
AADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRILHEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYH
QEGGVFDRMLADIAAERPIELWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET
LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL

Sequences:

>Translated_291_residues
MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAPALEGQDVVIHAAITFDEEMA
AADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRILHEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYH
QEGGVFDRMLADIAAERPIELWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET
LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL
>Mature_291_residues
MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAPALEGQDVVIHAAITFDEEMA
AADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRILHEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYH
QEGGVFDRMLADIAAERPIELWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET
LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL

Specific function: Unknown

COG id: COG0451

COG function: function code MG; Nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Saccharomyces cerevisiae, GI6322972, Length=293, Percent_Identity=26.962457337884, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31608; Mature: 31608

Theoretical pI: Translated: 6.28; Mature: 6.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAP
CEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHCC
ALEGQDVVIHAAITFDEEMAAADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRIL
CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEEECCCCCEE
HEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYHQEGGVFDRMLADIAAERPIE
ECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCEEEEECCCCHHHHHHHHHHHCCCHH
LWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET
HCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCHHH
LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL
HHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEECCCCCCCCHHHHHHHCCCC
>Mature Secondary Structure
MRIFLLGATGSIGTALLPELLAAGHHVTALCRSDIAARTVDAQGAKVCRGDMRAPQDWAP
CEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCHHCC
ALEGQDVVIHAAITFDEEMAAADRQVVDTLINAAQTRAAALRVIYTGGCWLYGDTRGRIL
CCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCEEEEECCCCCEE
HEADGFNPIPAFRPFLNQAERLMREPTLSTATLHPAMVYHQEGGVFDRMLADIAAERPIE
ECCCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCEEEEECCCCHHHHHHHHHHHCCCHH
LWGNASIRWPLIHRKDLAVAYRLLAEDPDLTGHFNAVAQCGVEIGAIAATLARAHGHDET
HCCCCCEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCHHH
LNCLSRAKAQALAGHWAEGPMLDQRLSGARLRAATGWVPQYQDLEQCFPPL
HHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEECCCCCCCCHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA