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The map label for this gene is rbsC [H]

Identifier: 99080210

GI number: 99080210

Start: 379177

End: 380241

Strand: Direct

Name: rbsC [H]

Synonym: TM1040_0369

Alternate gene names: 99080210

Gene position: 379177-380241 (Clockwise)

Preceding gene: 99080209

Following gene: 99080211

Centisome position: 11.85

GC content: 58.12

Gene sequence:

>1065_bases
ATGATGTCAACCCCGCAGAGCTATGAAGCCGCGGTCGCCGGAAGCCCGGACAAGGTCGCCGAATTTGATCAGGGCCCGCA
GAGTTTCATCCAGAAATTCCAGCACGCCCTGCATGTGACGCCTTCGCTCGTGCCGTTGATCGTGCTGGTGCTGTCCATCA
TCATATTCGGCCTCTTGTTGGGGTCAAAGTTCTTCTCTCCGTTTGCGCTCACGTTGATCCTGCAACAGGTTGGAATCGTG
GGTATTGTCGCCTGTGCCCAATCGCTGGTGATCCTCACCGCGGGCATCGATCTTTCGGTGGGGGCCATCATGGTGCTCTC
GTCGGTCGTGATGGGGCAGTTTACATTCCGCTATGGCCTGCCGCCAACCCTTGGGGTGGCCTGTGGGCTTTTGTGCGGCA
CGCTCTGCGGCTACATCAATGGCTGGCTCGTTGCGAAGATGAAACTGCCGCCGTTCATCGTGACGCTCGGCATGTGGCAG
ATCGTCCTGGCGTCGAATTTCCTCTATTCTGCCAATGAAACCATTCGCAGTCAGGTGATCGCCGAAGAGGCGCCCTTCCT
GCAGTTCTTTGGCGAGAAATTCAAAGTGGGCGGTGCGGTCTTCACCTACGGTGTGATCTTCATGATCGTCTTGGTGCTGG
TGCTTGCCTATGTGCTGCGTCACACCGCCTGGGGGCGACATGTCTATGCGGTTGGCGACGACAAGGACGCAGCCGAGCTG
TCGGGGGTCAATACCGACAAGGTGCTGATTTCTGTCTATATGCTCTCGGGTCTTATTTGCGCCTTTGCGGGCTGGGCGTT
GATCGGTCGCATCGGTTCGGTGTCTCCCACTTCGGGGCAGCTCTCCAATATCGAGTCCATCACCGCGGTGGTGATCGGGG
GCATTTCTCTCTTTGGCGGGCGAGGCTCGGTGCTTGGCACGTTCTTTGGCGCGCTGATCGTGGGTGTCTTTACGCTTGGT
CTTCGACTGCTCGGGGCAGATGCACAGTGGACCTATCTCCTCATCGGTGTGCTTATCATCGCCGCCGTGGCCGTGGACCA
GTGGATCAGAAAGGTGTCGGTATGA

Upstream 100 bases:

>100_bases
AGCACTCAATTCAGTTGGGCGGCGCGCCTTCGCCGCCCCTTTGGCCCTATTACAACAATGATAAAAACAAACCCCGCCGT
TGCGGGTGATTTGGAGGAGT

Downstream 100 bases:

>100_bases
TGGAACCCATTCTCAAAGGCCGCAATCTCGTCAAACGCTACGGGAAGGTCACGGCGCTCGATCATTGTGACTTCGACCTG
ATGCCGGGGGAGATTCTCGC

Product: inner-membrane translocator

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MMSTPQSYEAAVAGSPDKVAEFDQGPQSFIQKFQHALHVTPSLVPLIVLVLSIIIFGLLLGSKFFSPFALTLILQQVGIV
GIVACAQSLVILTAGIDLSVGAIMVLSSVVMGQFTFRYGLPPTLGVACGLLCGTLCGYINGWLVAKMKLPPFIVTLGMWQ
IVLASNFLYSANETIRSQVIAEEAPFLQFFGEKFKVGGAVFTYGVIFMIVLVLVLAYVLRHTAWGRHVYAVGDDKDAAEL
SGVNTDKVLISVYMLSGLICAFAGWALIGRIGSVSPTSGQLSNIESITAVVIGGISLFGGRGSVLGTFFGALIVGVFTLG
LRLLGADAQWTYLLIGVLIIAAVAVDQWIRKVSV

Sequences:

>Translated_354_residues
MMSTPQSYEAAVAGSPDKVAEFDQGPQSFIQKFQHALHVTPSLVPLIVLVLSIIIFGLLLGSKFFSPFALTLILQQVGIV
GIVACAQSLVILTAGIDLSVGAIMVLSSVVMGQFTFRYGLPPTLGVACGLLCGTLCGYINGWLVAKMKLPPFIVTLGMWQ
IVLASNFLYSANETIRSQVIAEEAPFLQFFGEKFKVGGAVFTYGVIFMIVLVLVLAYVLRHTAWGRHVYAVGDDKDAAEL
SGVNTDKVLISVYMLSGLICAFAGWALIGRIGSVSPTSGQLSNIESITAVVIGGISLFGGRGSVLGTFFGALIVGVFTLG
LRLLGADAQWTYLLIGVLIIAAVAVDQWIRKVSV
>Mature_354_residues
MMSTPQSYEAAVAGSPDKVAEFDQGPQSFIQKFQHALHVTPSLVPLIVLVLSIIIFGLLLGSKFFSPFALTLILQQVGIV
GIVACAQSLVILTAGIDLSVGAIMVLSSVVMGQFTFRYGLPPTLGVACGLLCGTLCGYINGWLVAKMKLPPFIVTLGMWQ
IVLASNFLYSANETIRSQVIAEEAPFLQFFGEKFKVGGAVFTYGVIFMIVLVLVLAYVLRHTAWGRHVYAVGDDKDAAEL
SGVNTDKVLISVYMLSGLICAFAGWALIGRIGSVSPTSGQLSNIESITAVVIGGISLFGGRGSVLGTFFGALIVGVFTLG
LRLLGADAQWTYLLIGVLIIAAVAVDQWIRKVSV

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=309, Percent_Identity=35.5987055016181, Blast_Score=144, Evalue=8e-36,
Organism=Escherichia coli, GI1788896, Length=274, Percent_Identity=34.6715328467153, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1790524, Length=305, Percent_Identity=33.1147540983607, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI87082395, Length=313, Percent_Identity=30.3514376996805, Blast_Score=107, Evalue=9e-25,
Organism=Escherichia coli, GI1789992, Length=137, Percent_Identity=36.4963503649635, Blast_Score=99, Evalue=4e-22,
Organism=Escherichia coli, GI145693214, Length=275, Percent_Identity=36, Blast_Score=98, Evalue=7e-22,
Organism=Escherichia coli, GI145693152, Length=301, Percent_Identity=29.5681063122924, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787794, Length=266, Percent_Identity=33.4586466165414, Blast_Score=89, Evalue=5e-19,
Organism=Escherichia coli, GI1788471, Length=320, Percent_Identity=31.875, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1787793, Length=297, Percent_Identity=31.6498316498317, Blast_Score=87, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37573; Mature: 37573

Theoretical pI: Translated: 7.87; Mature: 7.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSTPQSYEAAVAGSPDKVAEFDQGPQSFIQKFQHALHVTPSLVPLIVLVLSIIIFGLLL
CCCCCCCCCHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GSKFFSPFALTLILQQVGIVGIVACAQSLVILTAGIDLSVGAIMVLSSVVMGQFTFRYGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PPTLGVACGLLCGTLCGYINGWLVAKMKLPPFIVTLGMWQIVLASNFLYSANETIRSQVI
CHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEEAPFLQFFGEKFKVGGAVFTYGVIFMIVLVLVLAYVLRHTAWGRHVYAVGDDKDAAEL
HHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
SGVNTDKVLISVYMLSGLICAFAGWALIGRIGSVSPTSGQLSNIESITAVVIGGISLFGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
RGSVLGTFFGALIVGVFTLGLRLLGADAQWTYLLIGVLIIAAVAVDQWIRKVSV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MMSTPQSYEAAVAGSPDKVAEFDQGPQSFIQKFQHALHVTPSLVPLIVLVLSIIIFGLLL
CCCCCCCCCHHHCCCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
GSKFFSPFALTLILQQVGIVGIVACAQSLVILTAGIDLSVGAIMVLSSVVMGQFTFRYGL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC
PPTLGVACGLLCGTLCGYINGWLVAKMKLPPFIVTLGMWQIVLASNFLYSANETIRSQVI
CHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AEEAPFLQFFGEKFKVGGAVFTYGVIFMIVLVLVLAYVLRHTAWGRHVYAVGDDKDAAEL
HHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHH
SGVNTDKVLISVYMLSGLICAFAGWALIGRIGSVSPTSGQLSNIESITAVVIGGISLFGG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
RGSVLGTFFGALIVGVFTLGLRLLGADAQWTYLLIGVLIIAAVAVDQWIRKVSV
CCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]