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The map label for this gene is tdhA [H]

Identifier: 99080188

GI number: 99080188

Start: 353932

End: 355944

Strand: Direct

Name: tdhA [H]

Synonym: TM1040_0347

Alternate gene names: 99080188

Gene position: 353932-355944 (Clockwise)

Preceding gene: 99080183

Following gene: 99080189

Centisome position: 11.06

GC content: 58.42

Gene sequence:

>2013_bases
ATGCAAATCAAAGACATGCGCGGGGTGCTTTTGTGCTCCGCTTCGGCAATGGCATTGGCGCTGAGCGCACCGGTGGCGAA
GGCTCAGGACGTAAGCGAAGAGGACGGCTTCCTCGGGCTCTTGGTGCTTGGCAACAACAAACGCGAGGTGCAGACCGACA
CCGCAGCGCCTGAAACGGTCATCAACGCCGAAGAAATTCAGGACCGTCAGGCCAGCAGCATTGCCGAGCTCATCGACTCT
GTGCCCGGTGTGGCGCTGGTGAATTCCGGCACCCCGACGGGGGCGGGGATCAACATTCGCGGACATGGTGCGGATGGCAC
CTATGGCGCCAACCAAAAGGTCCAGATCCAGATCGACGGGGCCTCGGTCGGCTCCGAGGAGCTCTATCGCATCGGCACCC
AATTGACGACCGATCCTGAGCTCTATCGCGAGGTTTCCGTCATTCGCGGCACTGTGGGGTCGTTTGAATATGGCTCCGGG
GTGATTGGCGGCGTGGTGCGGCTTGATACGATCAATGCCTCGGATCTCACCGATGGTCAGGTCGGTCTCTCGGGACGGCA
GACGCTGGGCTATCACGGCAATTCGAACGCGCGGATCTCATCGACGATCCTGGGCTGGCAACCCACTGAGAACCTTGAAT
TCTTGTTCAACTACACGCGGCGCGAGCAAGATGATTACACCGATGGCAACGGGGATGTCGTCAGCGATACCGCCTCTGAG
GTTTCATCGCTGCTCTTGAAAGGCAAATACAGCTTTGGCGACAATGCGGCGCAATCCCTGACCCTGTCGTTCAATGAGAG
CACATCGGACGAAAAAGACGTCCCCTATGATGCATTTGCGGGCAATGCGGCCTTTGGCAATGTGGACCGCCTGACCGAGA
CCAAATCGGCCGTGCTGGAATATGCTTACAACCCGCTGGGCAATGATCTGGTCGATCTCACGGCGACGCTGTCCTATGCG
GATCAATACATCGAGCAAGAGCAGGTGAGTGGGACGCCCTTTGGTATTCAGGACGCCGATCACCGCTATGAGACAACCAA
GCTCACTGTGAAAAACAGCGCGTTGTTTCAGGCGTTTGGGGCCAAGCACACCCTGCGTGCGGGGGCTGAAATCCTGCGAA
AGGAACGGTTGAATGCGGCGTCGGCCCCGGGCGGTACGGATCAACGGCTGGCGCTCTTTGCGATTGATGAGCTTGATTTC
GACAATGGCCTGACGGTGACACCGGCGCTGCGCTACGAACGCCAGGAGATCGAGGCCAGCACGGATGGCAACAACATCCG
CGCGGGAGAGACCTTCAACAACAGCGCGCTCATGGGCGGGGTCTCTGCACGCTACGCGTTCCAGAACGGCTTTGCGGTAT
TTGGCTCGGTCGCCTATACGGCCGGTTTCCCGATCATCGACGATGTTGATTACGCCGACTATCCGACCTTGATGACCCAG
ACTGAAAAAGCGGTCACGCATGAGATCGGCGCGTCCTTTGACCGGGTTGGCGTATTTGCCTCCGATGATGTTGTGATGGC
CAAGGTGAACCTCTGGCAGACCAGACTCTGGGACTACACCTCGTCGGGATCCAGCTTTGCCGAGTTTGACCGTCAGGACA
CCAAGGGCGTGGAGATCGAGGCCTCTTACAGCCATATGTCGGGGTTCTATGTGGATATGAACGCCAACATCAGCAGCGGC
CATTGGACCAAATTCCAGAGCGGAACCAATGAGCGCTATCGCGAGCGCTATGATGGCATGCCGCCCACCAATCTGGCGCT
GACCCTCGGCAAGAAGTTCAACGAACAGCTCGATGTGTCCTGGGAAGGCGCGTTCTTCAAGCGGTTCGAAGACACCCCCG
GGTTTGCGGTGCACAACCTGCGGGCCTCTTACGACATCGACACGGGGTTCTTGAAAGAAGCCAAGCTACGCGTGGGCGTC
GATAACCTTTTTGACAAGCAATATCAGACGCATCTGGCGACGCGCCCGGCGCCGGGTCGCAACATCAAAGTGTCGCTGAC
GGCGGCTTTCTAA

Upstream 100 bases:

>100_bases
CGCTGAAAGATCGGAATATTTCGATCCTTGAGGCGCAAGATACCAAGCCAGCCCCGGGCGAGCATGCGGAATCCAACTGC
AGAAAGAACATGGGGACGAC

Downstream 100 bases:

>100_bases
CCAAGGAGCAGAGACGAAGATGATGATCCAAAGCCAGGTTTACAAAGCCGTATGCGCGCTTGCTGTCCTCACCTCCCTCG
GGGGGGCAGCCATGGCGCAG

Product: TonB-dependent receptor, plug

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 670; Mature: 670

Protein sequence:

>670_residues
MQIKDMRGVLLCSASAMALALSAPVAKAQDVSEEDGFLGLLVLGNNKREVQTDTAAPETVINAEEIQDRQASSIAELIDS
VPGVALVNSGTPTGAGINIRGHGADGTYGANQKVQIQIDGASVGSEELYRIGTQLTTDPELYREVSVIRGTVGSFEYGSG
VIGGVVRLDTINASDLTDGQVGLSGRQTLGYHGNSNARISSTILGWQPTENLEFLFNYTRREQDDYTDGNGDVVSDTASE
VSSLLLKGKYSFGDNAAQSLTLSFNESTSDEKDVPYDAFAGNAAFGNVDRLTETKSAVLEYAYNPLGNDLVDLTATLSYA
DQYIEQEQVSGTPFGIQDADHRYETTKLTVKNSALFQAFGAKHTLRAGAEILRKERLNAASAPGGTDQRLALFAIDELDF
DNGLTVTPALRYERQEIEASTDGNNIRAGETFNNSALMGGVSARYAFQNGFAVFGSVAYTAGFPIIDDVDYADYPTLMTQ
TEKAVTHEIGASFDRVGVFASDDVVMAKVNLWQTRLWDYTSSGSSFAEFDRQDTKGVEIEASYSHMSGFYVDMNANISSG
HWTKFQSGTNERYRERYDGMPPTNLALTLGKKFNEQLDVSWEGAFFKRFEDTPGFAVHNLRASYDIDTGFLKEAKLRVGV
DNLFDKQYQTHLATRPAPGRNIKVSLTAAF

Sequences:

>Translated_670_residues
MQIKDMRGVLLCSASAMALALSAPVAKAQDVSEEDGFLGLLVLGNNKREVQTDTAAPETVINAEEIQDRQASSIAELIDS
VPGVALVNSGTPTGAGINIRGHGADGTYGANQKVQIQIDGASVGSEELYRIGTQLTTDPELYREVSVIRGTVGSFEYGSG
VIGGVVRLDTINASDLTDGQVGLSGRQTLGYHGNSNARISSTILGWQPTENLEFLFNYTRREQDDYTDGNGDVVSDTASE
VSSLLLKGKYSFGDNAAQSLTLSFNESTSDEKDVPYDAFAGNAAFGNVDRLTETKSAVLEYAYNPLGNDLVDLTATLSYA
DQYIEQEQVSGTPFGIQDADHRYETTKLTVKNSALFQAFGAKHTLRAGAEILRKERLNAASAPGGTDQRLALFAIDELDF
DNGLTVTPALRYERQEIEASTDGNNIRAGETFNNSALMGGVSARYAFQNGFAVFGSVAYTAGFPIIDDVDYADYPTLMTQ
TEKAVTHEIGASFDRVGVFASDDVVMAKVNLWQTRLWDYTSSGSSFAEFDRQDTKGVEIEASYSHMSGFYVDMNANISSG
HWTKFQSGTNERYRERYDGMPPTNLALTLGKKFNEQLDVSWEGAFFKRFEDTPGFAVHNLRASYDIDTGFLKEAKLRVGV
DNLFDKQYQTHLATRPAPGRNIKVSLTAAF
>Mature_670_residues
MQIKDMRGVLLCSASAMALALSAPVAKAQDVSEEDGFLGLLVLGNNKREVQTDTAAPETVINAEEIQDRQASSIAELIDS
VPGVALVNSGTPTGAGINIRGHGADGTYGANQKVQIQIDGASVGSEELYRIGTQLTTDPELYREVSVIRGTVGSFEYGSG
VIGGVVRLDTINASDLTDGQVGLSGRQTLGYHGNSNARISSTILGWQPTENLEFLFNYTRREQDDYTDGNGDVVSDTASE
VSSLLLKGKYSFGDNAAQSLTLSFNESTSDEKDVPYDAFAGNAAFGNVDRLTETKSAVLEYAYNPLGNDLVDLTATLSYA
DQYIEQEQVSGTPFGIQDADHRYETTKLTVKNSALFQAFGAKHTLRAGAEILRKERLNAASAPGGTDQRLALFAIDELDF
DNGLTVTPALRYERQEIEASTDGNNIRAGETFNNSALMGGVSARYAFQNGFAVFGSVAYTAGFPIIDDVDYADYPTLMTQ
TEKAVTHEIGASFDRVGVFASDDVVMAKVNLWQTRLWDYTSSGSSFAEFDRQDTKGVEIEASYSHMSGFYVDMNANISSG
HWTKFQSGTNERYRERYDGMPPTNLALTLGKKFNEQLDVSWEGAFFKRFEDTPGFAVHNLRASYDIDTGFLKEAKLRVGV
DNLFDKQYQTHLATRPAPGRNIKVSLTAAF

Specific function: Heme receptor [H]

COG id: COG1629

COG function: function code P; Outer membrane receptor proteins, mostly Fe transport

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tonB-dependent receptor family [H]

Homologues:

None

Paralogues:

None

Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012910
- InterPro:   IPR000531
- InterPro:   IPR011276
- InterPro:   IPR010949 [H]

Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]

EC number: NA

Molecular weight: Translated: 72778; Mature: 72778

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS01156 TONB_DEPENDENT_REC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIKDMRGVLLCSASAMALALSAPVAKAQDVSEEDGFLGLLVLGNNKREVQTDTAAPETV
CCCCCCCCEEEECCCHHHHHHHCCCHHHCCCCCCCCEEEEEEECCCCCEEECCCCCCCCC
INAEEIQDRQASSIAELIDSVPGVALVNSGTPTGAGINIRGHGADGTYGANQKVQIQIDG
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECC
ASVGSEELYRIGTQLTTDPELYREVSVIRGTVGSFEYGSGVIGGVVRLDTINASDLTDGQ
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
VGLSGRQTLGYHGNSNARISSTILGWQPTENLEFLFNYTRREQDDYTDGNGDVVSDTASE
CCCCCCEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCHHHH
VSSLLLKGKYSFGDNAAQSLTLSFNESTSDEKDVPYDAFAGNAAFGNVDRLTETKSAVLE
HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHH
YAYNPLGNDLVDLTATLSYADQYIEQEQVSGTPFGIQDADHRYETTKLTVKNSALFQAFG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHC
AKHTLRAGAEILRKERLNAASAPGGTDQRLALFAIDELDFDNGLTVTPALRYERQEIEAS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCEECHHHHHHHHHHCCC
TDGNNIRAGETFNNSALMGGVSARYAFQNGFAVFGSVAYTAGFPIIDDVDYADYPTLMTQ
CCCCCEECCCCCCCCEEECCCEEEEECCCCCEEEEEHHHHCCCCCEECCCCCCCCHHHHH
TEKAVTHEIGASFDRVGVFASDDVVMAKVNLWQTRLWDYTSSGSSFAEFDRQDTKGVEIE
HHHHHHHHHCCCHHHEEEEECCCEEEEEEEHHHHHHCCCCCCCCHHHHHCCCCCCCEEEE
ASYSHMSGFYVDMNANISSGHWTKFQSGTNERYRERYDGMPPTNLALTLGKKFNEQLDVS
ECCCCCCEEEEEECCCCCCCCCEEECCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCE
WEGAFFKRFEDTPGFAVHNLRASYDIDTGFLKEAKLRVGVDNLFDKQYQTHLATRPAPGR
ECCHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHEEECHHHHHHHHHHHHHCCCCCCCC
NIKVSLTAAF
EEEEEEEEEC
>Mature Secondary Structure
MQIKDMRGVLLCSASAMALALSAPVAKAQDVSEEDGFLGLLVLGNNKREVQTDTAAPETV
CCCCCCCCEEEECCCHHHHHHHCCCHHHCCCCCCCCEEEEEEECCCCCEEECCCCCCCCC
INAEEIQDRQASSIAELIDSVPGVALVNSGTPTGAGINIRGHGADGTYGANQKVQIQIDG
CCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECC
ASVGSEELYRIGTQLTTDPELYREVSVIRGTVGSFEYGSGVIGGVVRLDTINASDLTDGQ
CCCCHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCC
VGLSGRQTLGYHGNSNARISSTILGWQPTENLEFLFNYTRREQDDYTDGNGDVVSDTASE
CCCCCCEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCEECCHHHH
VSSLLLKGKYSFGDNAAQSLTLSFNESTSDEKDVPYDAFAGNAAFGNVDRLTETKSAVLE
HHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHH
YAYNPLGNDLVDLTATLSYADQYIEQEQVSGTPFGIQDADHRYETTKLTVKNSALFQAFG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCHHHHHHC
AKHTLRAGAEILRKERLNAASAPGGTDQRLALFAIDELDFDNGLTVTPALRYERQEIEAS
CCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEEECCCCCCCEECHHHHHHHHHHCCC
TDGNNIRAGETFNNSALMGGVSARYAFQNGFAVFGSVAYTAGFPIIDDVDYADYPTLMTQ
CCCCCEECCCCCCCCEEECCCEEEEECCCCCEEEEEHHHHCCCCCEECCCCCCCCHHHHH
TEKAVTHEIGASFDRVGVFASDDVVMAKVNLWQTRLWDYTSSGSSFAEFDRQDTKGVEIE
HHHHHHHHHCCCHHHEEEEECCCEEEEEEEHHHHHHCCCCCCCCHHHHHCCCCCCCEEEE
ASYSHMSGFYVDMNANISSGHWTKFQSGTNERYRERYDGMPPTNLALTLGKKFNEQLDVS
ECCCCCCEEEEEECCCCCCCCCEEECCCCCHHHHHHHCCCCCCCEEEEECCCCCCCCCCE
WEGAFFKRFEDTPGFAVHNLRASYDIDTGFLKEAKLRVGVDNLFDKQYQTHLATRPAPGR
ECCHHHHHCCCCCCEEEEEEEEECCCCCCHHHHHHEEECHHHHHHHHHHHHHCCCCCCCC
NIKVSLTAAF
EEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9712775 [H]