| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is ycbX [C]
Identifier: 99080147
GI number: 99080147
Start: 311365
End: 312102
Strand: Reverse
Name: ycbX [C]
Synonym: TM1040_0306
Alternate gene names: 99080147
Gene position: 312102-311365 (Counterclockwise)
Preceding gene: 99080148
Following gene: 99080146
Centisome position: 9.75
GC content: 64.77
Gene sequence:
>738_bases ATGACAGCAACTGTCAGACAAATGTGGCGGCACCCGATCAAGGGGATCGGGGCCGAACCACTGACAGAGGTCCGCTTGGA AACAGGCGGGCCTATGCCGTTGGATCGGGCCTGGGCAGTGTTGACCGGCACCTCCGAGGACACCGGCGCATGGCAGCCTT GCCGCAATTTTGCGCGCGGCTGCTTTGGTCCCGAACTGATGGCGATCACCGCCGAGACGCAAGGCAACCAGATCACCCTG CGCCACCCCAAACAGGGCGAGATCACCCTTGATCCGGCCACCGATGGCGCACGGCTTCTGGAGTGGCTCCTGCCGCTCTA CCCCGCCGAGCGCCCTCAGCCTCATACGCTCATCAAGGCCCCCGCGGGCGGCATGGCGGATGCGGATTTCTCTGCCGTAG CGATCCTGTCGCTCACCTCCCTCAAGGCGCTTGGTGATGCGCTGGGACAGGAGCTCGACCCGCGCCGGTTCCGGGGCAAT CTCTGGATCGACGGCACCGCCCCCTTTGAAGAATTTGACTGGGTCGGGCGCGAGCTCAAGATAGGAACCGCGCGCCTTGA GGTGGTGGACCGTATCACCCGTTGTCGCGCCACCGAGACCAACCCCGAGACCGGCGCGCGCGATGCCAACACGCTGAAAG CGCTGCGCGAGCATTGGGGCCACACCGATTTTGGCATCCGCGCCAGAGTCCTGAGCGATGGCGACATCGCGCTTTCCGAC AGCCTAGAGGTTCTGTGA
Upstream 100 bases:
>100_bases AGCAGTATCTGATCATGCGCTCGCACGGCTATACCCCTGATGTCTTTGGCAATATCAAGTCAGGCTTCAAGAAGGACAAA GCCGAGAAAGCCGAGAAGAA
Downstream 100 bases:
>100_bases TGCAGCTTCCCTTTCCCCTCGCCGAAGAGCCCGATGCAGCGGCCATGGAAACCGGGCGCAAGCTCTTTGCCGGCCAGTCC GAGTTCCTCAAGGGCGTGGT
Product: MOSC domain-containing protein
Products: NA
Alternate protein names: MOSC Domain Containing Protein; Mosc Domain Protein; MOSC Domain Protein; Mosc Domain Containing Protein; Transcriptional Regulator; Mosc Domain; Xylene Monooxygenase Electron Transfer Component
Number of amino acids: Translated: 245; Mature: 244
Protein sequence:
>245_residues MTATVRQMWRHPIKGIGAEPLTEVRLETGGPMPLDRAWAVLTGTSEDTGAWQPCRNFARGCFGPELMAITAETQGNQITL RHPKQGEITLDPATDGARLLEWLLPLYPAERPQPHTLIKAPAGGMADADFSAVAILSLTSLKALGDALGQELDPRRFRGN LWIDGTAPFEEFDWVGRELKIGTARLEVVDRITRCRATETNPETGARDANTLKALREHWGHTDFGIRARVLSDGDIALSD SLEVL
Sequences:
>Translated_245_residues MTATVRQMWRHPIKGIGAEPLTEVRLETGGPMPLDRAWAVLTGTSEDTGAWQPCRNFARGCFGPELMAITAETQGNQITL RHPKQGEITLDPATDGARLLEWLLPLYPAERPQPHTLIKAPAGGMADADFSAVAILSLTSLKALGDALGQELDPRRFRGN LWIDGTAPFEEFDWVGRELKIGTARLEVVDRITRCRATETNPETGARDANTLKALREHWGHTDFGIRARVLSDGDIALSD SLEVL >Mature_244_residues TATVRQMWRHPIKGIGAEPLTEVRLETGGPMPLDRAWAVLTGTSEDTGAWQPCRNFARGCFGPELMAITAETQGNQITLR HPKQGEITLDPATDGARLLEWLLPLYPAERPQPHTLIKAPAGGMADADFSAVAILSLTSLKALGDALGQELDPRRFRGNL WIDGTAPFEEFDWVGRELKIGTARLEVVDRITRCRATETNPETGARDANTLKALREHWGHTDFGIRARVLSDGDIALSDS LEVL
Specific function: Unknown
COG id: COG3217
COG function: function code R; Uncharacterized Fe-S protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26886; Mature: 26755
Theoretical pI: Translated: 5.18; Mature: 5.18
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATVRQMWRHPIKGIGAEPLTEVRLETGGPMPLDRAWAVLTGTSEDTGAWQPCRNFARG CCHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH CFGPELMAITAETQGNQITLRHPKQGEITLDPATDGARLLEWLLPLYPAERPQPHTLIKA CCCCCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEC PAGGMADADFSAVAILSLTSLKALGDALGQELDPRRFRGNLWIDGTAPFEEFDWVGRELK CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEECCCCCHHHHHHCCCEEE IGTARLEVVDRITRCRATETNPETGARDANTLKALREHWGHTDFGIRARVLSDGDIALSD ECHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEECC SLEVL CCCCC >Mature Secondary Structure TATVRQMWRHPIKGIGAEPLTEVRLETGGPMPLDRAWAVLTGTSEDTGAWQPCRNFARG CHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH CFGPELMAITAETQGNQITLRHPKQGEITLDPATDGARLLEWLLPLYPAERPQPHTLIKA CCCCCEEEEEECCCCCEEEEECCCCCCEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEC PAGGMADADFSAVAILSLTSLKALGDALGQELDPRRFRGNLWIDGTAPFEEFDWVGRELK CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCEEECCCCCHHHHHHCCCEEE IGTARLEVVDRITRCRATETNPETGARDANTLKALREHWGHTDFGIRARVLSDGDIALSD ECHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEEEECCCCEEECC SLEVL CCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA