| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is bztC [H]
Identifier: 99080137
GI number: 99080137
Start: 302763
End: 304091
Strand: Direct
Name: bztC [H]
Synonym: TM1040_0296
Alternate gene names: 99080137
Gene position: 302763-304091 (Clockwise)
Preceding gene: 99080136
Following gene: 99080138
Centisome position: 9.46
GC content: 58.54
Gene sequence:
>1329_bases ATGAGTGACATTTCTTTTGTACGCACAGAGATGCTGCCGCCCAAAGAACCCCCTGCAAGCGAAGTGGGTGTGCTGGGCTG GATGCGCGCAAACCTGTTCTCGAACTGGTTCAACTCGGTCCTGACCCTGGTATCGCTCTATTTTGTGATCCAGATCCTGA TAGGGCTGATCACTTGGGCCTGGGTGCCAACATGGTCGGCGGGCTCGCTCCCGGAGTGTCGTGTCATCTTTGAAGAGCTG GGCCGCACGGGCCACAATGCCGGGGCCTGCTGGGGCGTGATCGCCGAACGCTGGCCGCAGCTGCTGTTTGGGTTCTACCC GAATGGCTCCGAGCCGGGGACGGCTGACCTGCGCTGGCGACCGGTTCTGGCCTTCTTGCTGCTGTTCGTGGCTTTGGCGC CGGTGCTCTTTGCCGACAAGGTGCCTGCAAAGCTGATCTACTTCAGCGCAGCATACCCGTTCCTGATGCCCTGGCTTCTG TGGGGCGGTACCGTTTGGACGCCGGTTATGATCGCAGCGGGCTTTGTTGTGGGCTACTTCGTCTACAAAGCGGTGTCGCA AGCGACGTCGGAACTGATTGGCCTGATTTCAGGGGTCGTTGGCGCCGTTGTCTGGTGGCTCTTTGTGGCGTCGTTCATTG CGTCGGTTCTTGCAGGGATCGTGCCTTTGGCACTGGAATCTGTCGAGTCGCGCCAGTTCGGGGGCTTCATGCTGTCGATC CTCATCGGGGTTGTGGCCATCGGTCTGTCCTTGCCGATCGGGATCGTGCTGGCGCTTGGTCGTCAGTCGGACCTGTTGAT CGTCAAGACACTCTGCGTGGGCTTTATCGAGTTCATTCGCGGTGTGCCGCTGATCACGCTTCTGTTTGTGGCCTCGACGC TGTTGAACATCTTCATGCCTCCGGGGACGAACTTTGACATCATCATGCGTGTGTTCATCATGGTGACGCTCTTTGCCTCT GCCTATATGGCCGAGGTGATCCGGGGTGGCCTCGCGGCTCTGCCCAAGGGTCAGTATGAGGGTGCCGACAGTCTTGGCCT CAATTACTGGCAGGCGCAGCGTCTGATCATCATGCCGCAGGCATTGAAGATCTCCATTCCGGGCATCGTCTCCACCTTCA TCGGCGTTTTCAAGGACACCACCCTGGTGTCGGTCATCGGTCTCTTTGACCCGCTGAACCTGACAAACGCCATCCGTGCT GACGCAAATTGGAACGGCCTCGTGTGGGAGCTTTATGGCTTCATCGCGCTTCTGTTCTTCGTCTTCTGCTTCGGCATGTC CCGCTATTCCATGTACCTGGAGCGCAAACTCCAGACTGGCCACCGTTAA
Upstream 100 bases:
>100_bases ACCGTGCTTTTGGGCATGCTCGTGTACCTCACGATCAGCCTGCTGATTTCCAGCGTCATGAACTGGTACAACAATCGCGT CAAACTGGTGGAGCGGTAAC
Downstream 100 bases:
>100_bases GGAGTTCAACATATGTCTGAACTTGCTCTCGACCGAGAAATCGACCGCTCCAAGATGAAAGTCTCGGATGAGGTCGCCAT CCAGATCACCGATATGAACA
Product: amino acid ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 442; Mature: 441
Protein sequence:
>442_residues MSDISFVRTEMLPPKEPPASEVGVLGWMRANLFSNWFNSVLTLVSLYFVIQILIGLITWAWVPTWSAGSLPECRVIFEEL GRTGHNAGACWGVIAERWPQLLFGFYPNGSEPGTADLRWRPVLAFLLLFVALAPVLFADKVPAKLIYFSAAYPFLMPWLL WGGTVWTPVMIAAGFVVGYFVYKAVSQATSELIGLISGVVGAVVWWLFVASFIASVLAGIVPLALESVESRQFGGFMLSI LIGVVAIGLSLPIGIVLALGRQSDLLIVKTLCVGFIEFIRGVPLITLLFVASTLLNIFMPPGTNFDIIMRVFIMVTLFAS AYMAEVIRGGLAALPKGQYEGADSLGLNYWQAQRLIIMPQALKISIPGIVSTFIGVFKDTTLVSVIGLFDPLNLTNAIRA DANWNGLVWELYGFIALLFFVFCFGMSRYSMYLERKLQTGHR
Sequences:
>Translated_442_residues MSDISFVRTEMLPPKEPPASEVGVLGWMRANLFSNWFNSVLTLVSLYFVIQILIGLITWAWVPTWSAGSLPECRVIFEEL GRTGHNAGACWGVIAERWPQLLFGFYPNGSEPGTADLRWRPVLAFLLLFVALAPVLFADKVPAKLIYFSAAYPFLMPWLL WGGTVWTPVMIAAGFVVGYFVYKAVSQATSELIGLISGVVGAVVWWLFVASFIASVLAGIVPLALESVESRQFGGFMLSI LIGVVAIGLSLPIGIVLALGRQSDLLIVKTLCVGFIEFIRGVPLITLLFVASTLLNIFMPPGTNFDIIMRVFIMVTLFAS AYMAEVIRGGLAALPKGQYEGADSLGLNYWQAQRLIIMPQALKISIPGIVSTFIGVFKDTTLVSVIGLFDPLNLTNAIRA DANWNGLVWELYGFIALLFFVFCFGMSRYSMYLERKLQTGHR >Mature_441_residues SDISFVRTEMLPPKEPPASEVGVLGWMRANLFSNWFNSVLTLVSLYFVIQILIGLITWAWVPTWSAGSLPECRVIFEELG RTGHNAGACWGVIAERWPQLLFGFYPNGSEPGTADLRWRPVLAFLLLFVALAPVLFADKVPAKLIYFSAAYPFLMPWLLW GGTVWTPVMIAAGFVVGYFVYKAVSQATSELIGLISGVVGAVVWWLFVASFIASVLAGIVPLALESVESRQFGGFMLSIL IGVVAIGLSLPIGIVLALGRQSDLLIVKTLCVGFIEFIRGVPLITLLFVASTLLNIFMPPGTNFDIIMRVFIMVTLFASA YMAEVIRGGLAALPKGQYEGADSLGLNYWQAQRLIIMPQALKISIPGIVSTFIGVFKDTTLVSVIGLFDPLNLTNAIRAD ANWNGLVWELYGFIALLFFVFCFGMSRYSMYLERKLQTGHR
Specific function: Part of a binding-protein-dependent transport system for glutamate, glutamine, aspartate and asparagine. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0765
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI87082239, Length=430, Percent_Identity=40, Blast_Score=288, Evalue=5e-79, Organism=Escherichia coli, GI1788226, Length=212, Percent_Identity=31.6037735849057, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1786873, Length=209, Percent_Identity=28.2296650717703, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1787030, Length=205, Percent_Identity=27.3170731707317, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI48994930, Length=80, Percent_Identity=40, Blast_Score=69, Evalue=6e-13, Organism=Escherichia coli, GI1788646, Length=216, Percent_Identity=25, Blast_Score=69, Evalue=8e-13, Organism=Escherichia coli, GI1786874, Length=215, Percent_Identity=22.3255813953488, Blast_Score=68, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 48636; Mature: 48505
Theoretical pI: Translated: 7.91; Mature: 7.91
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDISFVRTEMLPPKEPPASEVGVLGWMRANLFSNWFNSVLTLVSLYFVIQILIGLITWA CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVPTWSAGSLPECRVIFEELGRTGHNAGACWGVIAERWPQLLFGFYPNGSEPGTADLRWR HCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHH PVLAFLLLFVALAPVLFADKVPAKLIYFSAAYPFLMPWLLWGGTVWTPVMIAAGFVVGYF HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH VYKAVSQATSELIGLISGVVGAVVWWLFVASFIASVLAGIVPLALESVESRQFGGFMLSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIGVVAIGLSLPIGIVLALGRQSDLLIVKTLCVGFIEFIRGVPLITLLFVASTLLNIFMP HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC PGTNFDIIMRVFIMVTLFASAYMAEVIRGGLAALPKGQYEGADSLGLNYWQAQRLIIMPQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHCCHHEEECC ALKISIPGIVSTFIGVFKDTTLVSVIGLFDPLNLTNAIRADANWNGLVWELYGFIALLFF HHEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH VFCFGMSRYSMYLERKLQTGHR HHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure SDISFVRTEMLPPKEPPASEVGVLGWMRANLFSNWFNSVLTLVSLYFVIQILIGLITWA CCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH WVPTWSAGSLPECRVIFEELGRTGHNAGACWGVIAERWPQLLFGFYPNGSEPGTADLRWR HCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCHH PVLAFLLLFVALAPVLFADKVPAKLIYFSAAYPFLMPWLLWGGTVWTPVMIAAGFVVGYF HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH VYKAVSQATSELIGLISGVVGAVVWWLFVASFIASVLAGIVPLALESVESRQFGGFMLSI HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIGVVAIGLSLPIGIVLALGRQSDLLIVKTLCVGFIEFIRGVPLITLLFVASTLLNIFMP HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC PGTNFDIIMRVFIMVTLFASAYMAEVIRGGLAALPKGQYEGADSLGLNYWQAQRLIIMPQ CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCHHHHCCHHEEECC ALKISIPGIVSTFIGVFKDTTLVSVIGLFDPLNLTNAIRADANWNGLVWELYGFIALLFF HHEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHH VFCFGMSRYSMYLERKLQTGHR HHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8809753 [H]