| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is bztB [H]
Identifier: 99080136
GI number: 99080136
Start: 301493
End: 302761
Strand: Direct
Name: bztB [H]
Synonym: TM1040_0295
Alternate gene names: 99080136
Gene position: 301493-302761 (Clockwise)
Preceding gene: 99080135
Following gene: 99080137
Centisome position: 9.42
GC content: 57.29
Gene sequence:
>1269_bases ATGTCGACTTTGACTGACCCGCCGAAAGAGACTTTTCGGCTGTCGATGCTGATTTACGACACCCGTTATCGCTCAGCCAC CATTCAGGTTGTCGCGCTGATCGGGTTCTTGATCCTGGTTGGATCAATCATCAGCAATACCGCACAAAACCTAGCAGATC TGGGTAAAGAGCCCAGTTTCAGATTCCTGTCAGAGCCTGCGGGCTATGACATCAACCAGCGCCTTCTGGATTATGACAAT CAGGACAGCCACATGCGCGCGTCCCTGATGGGGCTGTTGAACACGCTGGTTGTGGCCGTTCTGGGCTGTATTACCGCAAC CATTCTGGGTGTGATCATCGGTGTTCTGCGCCTGTCTTCGAACTGGCTTGTTGCCCGTTTGATGGCCGTTTACGTCGAGA TGTTCCGCAACGTGCCGCTGCTCTTGTGGATCGTGTTCATCATGGCGATCCTGATCGAGACCCTGCCTGCGCCGCGGGCG TTCCGGGGGGAAAACCCCGAAGCGACCATGAGCGTCTTTGACAGCGTTGCCGTCACCAACCGCGGTGTCTATGTCCCGGA GCCGCTGTTCCATAACTCCCTTGGAAACATAGGTGTTTTTGGTGATTCAGCTGTTCGCTTTGACGTCTCGCTGGACCTGA TCGCGTTGCTGGTCGTTCTGGGCGCGAGCCTTTATGTCTCCAAACGCATCCGCCTCTGGGCCGATCAGACACAGGAGAGC ACGGGGCTTCGGCCAACCACCTGGCACATGCGCTCTGCCGTGGTTGTGCTGCCTTCGGCGTTGCTGCTGTTCGTGCTGGG GTTCCATCTGGGCTATCCGGCGCTCAAGGGGTTCAACTTTGCGGGCGGCACTCACCTGCGGAACTCCCTGATCGCTTTGT GGCTTGCGCTTTCGCTTTACACGGCTGCGTTTATCGCTGAAATCGTGCGCTCTGGTATCCTTGCGATCTCCAAGGGGCAG ACAGAGGCGGCCGCCGCCCTTGGCCTGCGTCCCAAGCGTATCATGAACCTTGTGATCCTGCCGCAGGCGCTGCGCGTGAT CATTCCGCCGCTGATCTCTAACTATCTGAACCTGACCAAGAACTCCTCGCTCGCGATCGCCGTGGGCTACATGGATCTGA CCGGGACCTTGATGGGGATCACCATGAACCAGACCGGACGGGAGTTGGAAACCGTGCTTTTGGGCATGCTCGTGTACCTC ACGATCAGCCTGCTGATTTCCAGCGTCATGAACTGGTACAACAATCGCGTCAAACTGGTGGAGCGGTAA
Upstream 100 bases:
>100_bases TTCTTCCAAGTTAAAGAATAACGAAATCTGCGGCTGATCCCGGAGTGAGGAAGAACCTCACCGGGAGGATTGGAACCGCA GGCCTCGGGGATCCCAACAT
Downstream 100 bases:
>100_bases CATGAGTGACATTTCTTTTGTACGCACAGAGATGCTGCCGCCCAAAGAACCCCCTGCAAGCGAAGTGGGTGTGCTGGGCT GGATGCGCGCAAACCTGTTC
Product: amino acid ABC transporter permease
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 422; Mature: 421
Protein sequence:
>422_residues MSTLTDPPKETFRLSMLIYDTRYRSATIQVVALIGFLILVGSIISNTAQNLADLGKEPSFRFLSEPAGYDINQRLLDYDN QDSHMRASLMGLLNTLVVAVLGCITATILGVIIGVLRLSSNWLVARLMAVYVEMFRNVPLLLWIVFIMAILIETLPAPRA FRGENPEATMSVFDSVAVTNRGVYVPEPLFHNSLGNIGVFGDSAVRFDVSLDLIALLVVLGASLYVSKRIRLWADQTQES TGLRPTTWHMRSAVVVLPSALLLFVLGFHLGYPALKGFNFAGGTHLRNSLIALWLALSLYTAAFIAEIVRSGILAISKGQ TEAAAALGLRPKRIMNLVILPQALRVIIPPLISNYLNLTKNSSLAIAVGYMDLTGTLMGITMNQTGRELETVLLGMLVYL TISLLISSVMNWYNNRVKLVER
Sequences:
>Translated_422_residues MSTLTDPPKETFRLSMLIYDTRYRSATIQVVALIGFLILVGSIISNTAQNLADLGKEPSFRFLSEPAGYDINQRLLDYDN QDSHMRASLMGLLNTLVVAVLGCITATILGVIIGVLRLSSNWLVARLMAVYVEMFRNVPLLLWIVFIMAILIETLPAPRA FRGENPEATMSVFDSVAVTNRGVYVPEPLFHNSLGNIGVFGDSAVRFDVSLDLIALLVVLGASLYVSKRIRLWADQTQES TGLRPTTWHMRSAVVVLPSALLLFVLGFHLGYPALKGFNFAGGTHLRNSLIALWLALSLYTAAFIAEIVRSGILAISKGQ TEAAAALGLRPKRIMNLVILPQALRVIIPPLISNYLNLTKNSSLAIAVGYMDLTGTLMGITMNQTGRELETVLLGMLVYL TISLLISSVMNWYNNRVKLVER >Mature_421_residues STLTDPPKETFRLSMLIYDTRYRSATIQVVALIGFLILVGSIISNTAQNLADLGKEPSFRFLSEPAGYDINQRLLDYDNQ DSHMRASLMGLLNTLVVAVLGCITATILGVIIGVLRLSSNWLVARLMAVYVEMFRNVPLLLWIVFIMAILIETLPAPRAF RGENPEATMSVFDSVAVTNRGVYVPEPLFHNSLGNIGVFGDSAVRFDVSLDLIALLVVLGASLYVSKRIRLWADQTQEST GLRPTTWHMRSAVVVLPSALLLFVLGFHLGYPALKGFNFAGGTHLRNSLIALWLALSLYTAAFIAEIVRSGILAISKGQT EAAAALGLRPKRIMNLVILPQALRVIIPPLISNYLNLTKNSSLAIAVGYMDLTGTLMGITMNQTGRELETVLLGMLVYLT ISLLISSVMNWYNNRVKLVER
Specific function: Part of a binding-protein-dependent transport system for glutamate, glutamine, aspartate and asparagine. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG4597
COG function: function code E; ABC-type amino acid transport system, permease component
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI48994930, Length=416, Percent_Identity=41.3461538461538, Blast_Score=276, Evalue=2e-75, Organism=Escherichia coli, GI1786873, Length=182, Percent_Identity=32.967032967033, Blast_Score=83, Evalue=4e-17, Organism=Escherichia coli, GI1788226, Length=128, Percent_Identity=37.5, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1786874, Length=125, Percent_Identity=36, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI87082239, Length=138, Percent_Identity=34.0579710144928, Blast_Score=77, Evalue=3e-15, Organism=Escherichia coli, GI1787030, Length=120, Percent_Identity=36.6666666666667, Blast_Score=65, Evalue=7e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010065 - InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 46385; Mature: 46253
Theoretical pI: Translated: 9.67; Mature: 9.67
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLTDPPKETFRLSMLIYDTRYRSATIQVVALIGFLILVGSIISNTAQNLADLGKEPSF CCCCCCCCHHHHEEEHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RFLSEPAGYDINQRLLDYDNQDSHMRASLMGLLNTLVVAVLGCITATILGVIIGVLRLSS HHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NWLVARLMAVYVEMFRNVPLLLWIVFIMAILIETLPAPRAFRGENPEATMSVFDSVAVTN CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC RGVYVPEPLFHNSLGNIGVFGDSAVRFDVSLDLIALLVVLGASLYVSKRIRLWADQTQES CCCCCCCHHHHCCCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TGLRPTTWHMRSAVVVLPSALLLFVLGFHLGYPALKGFNFAGGTHLRNSLIALWLALSLY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH TAAFIAEIVRSGILAISKGQTEAAAALGLRPKRIMNLVILPQALRVIIPPLISNYLNLTK HHHHHHHHHHCCCEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NSSLAIAVGYMDLTGTLMGITMNQTGRELETVLLGMLVYLTISLLISSVMNWYNNRVKLV CCCEEEEEEEEHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE ER CC >Mature Secondary Structure STLTDPPKETFRLSMLIYDTRYRSATIQVVALIGFLILVGSIISNTAQNLADLGKEPSF CCCCCCCHHHHEEEHEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC RFLSEPAGYDINQRLLDYDNQDSHMRASLMGLLNTLVVAVLGCITATILGVIIGVLRLSS HHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NWLVARLMAVYVEMFRNVPLLLWIVFIMAILIETLPAPRAFRGENPEATMSVFDSVAVTN CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCC RGVYVPEPLFHNSLGNIGVFGDSAVRFDVSLDLIALLVVLGASLYVSKRIRLWADQTQES CCCCCCCHHHHCCCCCCEEECCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC TGLRPTTWHMRSAVVVLPSALLLFVLGFHLGYPALKGFNFAGGTHLRNSLIALWLALSLY CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHH TAAFIAEIVRSGILAISKGQTEAAAALGLRPKRIMNLVILPQALRVIIPPLISNYLNLTK HHHHHHHHHHCCCEEEECCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC NSSLAIAVGYMDLTGTLMGITMNQTGRELETVLLGMLVYLTISLLISSVMNWYNNRVKLV CCCEEEEEEEEHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE ER CC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8809753 [H]