Definition Ruegeria sp. TM1040, complete genome.
Accession NC_008044
Length 3,200,938

Click here to switch to the map view.

The map label for this gene is 99080102

Identifier: 99080102

GI number: 99080102

Start: 274857

End: 275486

Strand: Reverse

Name: 99080102

Synonym: TM1040_0261

Alternate gene names: NA

Gene position: 275486-274857 (Counterclockwise)

Preceding gene: 99080123

Following gene: 99080079

Centisome position: 8.61

GC content: 60.16

Gene sequence:

>630_bases
ATGACAAAGGCCATCGGCATGGAAGCGTCTGAGACCCGTGAACCCCGGATTGAGCGGCCAAAGCTGACCTTTGCGCCGGA
GGTCTGCGACTGGGTCGAGGGTCATTACAAGGATGCAGACGTCATTCTGGAGTATGGCAGCGGCGGATCCACCGTGCTCG
GCGCCGAGATGCCCGGCAAAACGCTCTACTCTGTCGAGAGCAGCCGCGACTGGCACAAGATGATGCAGCGCTACTTTGAC
GAAAACGATGTCCCCTCTCTGCCGCATCTGCACTACGTCAACATCGGCAAGACCGGGAAGTGGGGCCTGCCGGTGAACAC
CGAGCAGCACCACCGCTATCACAAATACCCGCTCTCGATCTGGGATATCGACGGCTTTCAGCACCCGGATCTGATCCTGA
TTGACGGCCGGTTTCGGGTCGCCTGCGCCCTGGCTGCGATGCTGCGCTGCACCCGGAAGGTCACGATCCTCTTTGATGAC
TACCGCGACCGCAAACGCTATCGCGTGCTCGAGGAGTTTCTCGAGCTGAAAGAAATGCGCGGCTACATGGCCCGCTTTGA
GGTCGAACCAACCGCCCTGCCCCGCGAAAAGATGACCCGGATCATCGGCCTCTTTGCACGCGCCTTGTGA

Upstream 100 bases:

>100_bases
TTGTCCGGTGGGCAGCAGGGCGTCGCAAACCAGAGCCACATATTTGCGCAGGCTTGACTTTGTCCTAACCAGCCCACACC
ACAAACCCATAAGGTGATTT

Downstream 100 bases:

>100_bases
CGCTTCAGCAGCCTAGATGATCTCATCCTCGTCAAACATCGCCGCGCCATCAAGCTGCGCGTTGAGCGTTTCGATCTGTT
GTTCGGCGGTGGCGGAATTC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MTKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGKTLYSVESSRDWHKMMQRYFD
ENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSIWDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDD
YRDRKRYRVLEEFLELKEMRGYMARFEVEPTALPREKMTRIIGLFARAL

Sequences:

>Translated_209_residues
MTKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGKTLYSVESSRDWHKMMQRYFD
ENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSIWDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDD
YRDRKRYRVLEEFLELKEMRGYMARFEVEPTALPREKMTRIIGLFARAL
>Mature_208_residues
TKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGKTLYSVESSRDWHKMMQRYFDE
NDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSIWDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDDY
RDRKRYRVLEEFLELKEMRGYMARFEVEPTALPREKMTRIIGLFARAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24396; Mature: 24265

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGK
CCCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCC
TLYSVESSRDWHKMMQRYFDENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSI
EEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHCCCEECCCCEE
WDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDDYRDRKRYRVLEEFLELKEMR
EECCCCCCCCEEEECCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHH
GYMARFEVEPTALPREKMTRIIGLFARAL
HHHHHEECCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKAIGMEASETREPRIERPKLTFAPEVCDWVEGHYKDADVILEYGSGGSTVLGAEMPGK
CCCCCCCCCCCCCCCCCCCCEEECHHHHHHHHCCCCCCEEEEEECCCCCEEEECCCCCC
TLYSVESSRDWHKMMQRYFDENDVPSLPHLHYVNIGKTGKWGLPVNTEQHHRYHKYPLSI
EEEEECCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCHHCCCEECCCCEE
WDIDGFQHPDLILIDGRFRVACALAAMLRCTRKVTILFDDYRDRKRYRVLEEFLELKEMR
EECCCCCCCCEEEECCCHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHHHHHH
GYMARFEVEPTALPREKMTRIIGLFARAL
HHHHHEECCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA