| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080079
Identifier: 99080079
GI number: 99080079
Start: 257972
End: 258856
Strand: Reverse
Name: 99080079
Synonym: TM1040_0238
Alternate gene names: NA
Gene position: 258856-257972 (Counterclockwise)
Preceding gene: 99080102
Following gene: 99080064
Centisome position: 8.09
GC content: 60.68
Gene sequence:
>885_bases ATGCCCCGCCAGCAGGCCTTGCCCCGTTGGGATCGGCCCGCCATAGTCGCGCAGGATTATTTACGAGGGGATTTCGAGAT GCAAGTGATTGGCCTGTGCCGGTTCTCCTATCCCGCCATTGGCGGCTTTCAAATCGAACACCAGAGCCACGCTGAACGCA TTGCCTTCCTCTATGACGACGCCCGCCTTCAAGAGCGGTTTCGCCTCTTTGAGACGGTCGCCCTGCCCTCGCTTCGCGCG CAGACAGATCAGGATTTTGACCTTGTGATCGTCATTGGCAGCTGCCTGCCCGCTCGGCACGAGGCCCGCCTGCGCGATCT GATTTCGGGGATGCCGCAGGCGCGGATCGAGCAGCATCCCCCTCGGCGTCAGCGCGAGATCATGAAAGATGTTCTGAACC GGGCGCGGCGCGATCCCACTGCGCCCTGCCTGCAATTTCGCTTTGATGACGATGATGCGGTCTCGGTCGATTTTGTGGAA CGCTTGCGCAGCACCATCGCCGATTGCCCCGGGCTTGTGGCTCGTCACAAGAGCGTCGCGGTGGATTTCAACATGGGCTA TGTCGCCGAGTTTGGCGCTGAAGGCATCAAGGCCGCAGAGGTCCACAGCCCCTATAACGTCGCAGCCCTTGGCATGTATG TCCGGGGCGGGGCGAGGGTCACGATCATGAACTTTGCCCACCACAAGATCCTGCGATTTATGCCTACAGTGACCCTGTCG GATGCGCCCATGTTTGTGCGCGGCTGGCATGGCTCCAACGACTCGCGTCAAAAGCCGGTCAAATCCCTCGATCTCGCCCC GCTCACCCCCGCCCAAATCGCCGAATTCGTGGCGCGCTTTGCCATTCGTGAGGATAAGGTGCGTCAGGTGTTTTCTGCCA CCTGA
Upstream 100 bases:
>100_bases CCCTGACCTTGAGCCACTACAGATATGAGTTCGGCGTCAGAGGGATTTCCCCCATGCCGGATAGCGCGCGTATATTGAGA GTCGCGCGGGATGTCAACAC
Downstream 100 bases:
>100_bases CGTTCCCGTAGGAGCGTGAACAGCCCGGCCAGCACCACGATGACCGCGCCAAGGAGCGTGAGACCGGACGGGAATTCGCC AAAGACCGCCCAGCCCAACA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 294; Mature: 293
Protein sequence:
>294_residues MPRQQALPRWDRPAIVAQDYLRGDFEMQVIGLCRFSYPAIGGFQIEHQSHAERIAFLYDDARLQERFRLFETVALPSLRA QTDQDFDLVIVIGSCLPARHEARLRDLISGMPQARIEQHPPRRQREIMKDVLNRARRDPTAPCLQFRFDDDDAVSVDFVE RLRSTIADCPGLVARHKSVAVDFNMGYVAEFGAEGIKAAEVHSPYNVAALGMYVRGGARVTIMNFAHHKILRFMPTVTLS DAPMFVRGWHGSNDSRQKPVKSLDLAPLTPAQIAEFVARFAIREDKVRQVFSAT
Sequences:
>Translated_294_residues MPRQQALPRWDRPAIVAQDYLRGDFEMQVIGLCRFSYPAIGGFQIEHQSHAERIAFLYDDARLQERFRLFETVALPSLRA QTDQDFDLVIVIGSCLPARHEARLRDLISGMPQARIEQHPPRRQREIMKDVLNRARRDPTAPCLQFRFDDDDAVSVDFVE RLRSTIADCPGLVARHKSVAVDFNMGYVAEFGAEGIKAAEVHSPYNVAALGMYVRGGARVTIMNFAHHKILRFMPTVTLS DAPMFVRGWHGSNDSRQKPVKSLDLAPLTPAQIAEFVARFAIREDKVRQVFSAT >Mature_293_residues PRQQALPRWDRPAIVAQDYLRGDFEMQVIGLCRFSYPAIGGFQIEHQSHAERIAFLYDDARLQERFRLFETVALPSLRAQ TDQDFDLVIVIGSCLPARHEARLRDLISGMPQARIEQHPPRRQREIMKDVLNRARRDPTAPCLQFRFDDDDAVSVDFVER LRSTIADCPGLVARHKSVAVDFNMGYVAEFGAEGIKAAEVHSPYNVAALGMYVRGGARVTIMNFAHHKILRFMPTVTLSD APMFVRGWHGSNDSRQKPVKSLDLAPLTPAQIAEFVARFAIREDKVRQVFSAT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 33361; Mature: 33229
Theoretical pI: Translated: 8.63; Mature: 8.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPRQQALPRWDRPAIVAQDYLRGDFEMQVIGLCRFSYPAIGGFQIEHQSHAERIAFLYDD CCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHCCCCCCCEEECCHHHHHHEEHEECH ARLQERFRLFETVALPSLRAQTDQDFDLVIVIGSCLPARHEARLRDLISGMPQARIEQHP HHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHCCC PRRQREIMKDVLNRARRDPTAPCLQFRFDDDDAVSVDFVERLRSTIADCPGLVARHKSVA CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHHHHHHCCCHHHHCCCEEE VDFNMGYVAEFGAEGIKAAEVHSPYNVAALGMYVRGGARVTIMNFAHHKILRFMPTVTLS EEECCCHHHHHCCCCCEEHHCCCCCCHHEEEEEEECCCEEEEEHHHHHHHHHHHCCCEEC DAPMFVRGWHGSNDSRQKPVKSLDLAPLTPAQIAEFVARFAIREDKVRQVFSAT CCCEEEEECCCCCCCHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure PRQQALPRWDRPAIVAQDYLRGDFEMQVIGLCRFSYPAIGGFQIEHQSHAERIAFLYDD CCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEEHHCCCCCCCEEECCHHHHHHEEHEECH ARLQERFRLFETVALPSLRAQTDQDFDLVIVIGSCLPARHEARLRDLISGMPQARIEQHP HHHHHHHHHHHHHHCCCHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCHHHHHCCC PRRQREIMKDVLNRARRDPTAPCLQFRFDDDDAVSVDFVERLRSTIADCPGLVARHKSVA CHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEHHHHHHHHHHHHCCCHHHHCCCEEE VDFNMGYVAEFGAEGIKAAEVHSPYNVAALGMYVRGGARVTIMNFAHHKILRFMPTVTLS EEECCCHHHHHCCCCCEEHHCCCCCCHHEEEEEEECCCEEEEEHHHHHHHHHHHCCCEEC DAPMFVRGWHGSNDSRQKPVKSLDLAPLTPAQIAEFVARFAIREDKVRQVFSAT CCCEEEEECCCCCCCHHCCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA