| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is 99080091
Identifier: 99080091
GI number: 99080091
Start: 267658
End: 268230
Strand: Direct
Name: 99080091
Synonym: TM1040_0250
Alternate gene names: NA
Gene position: 267658-268230 (Clockwise)
Preceding gene: 99080090
Following gene: 99080092
Centisome position: 8.36
GC content: 53.93
Gene sequence:
>573_bases ATGTTCATCCAGCCGGATTGGTTTGATCCGACCCAGCCAGGGGTGGGGACGAATAGGTATTCTTATTCGAATAACGATCC AGTCAACTTACTCGATCCTTCTGGGAATCAAGCTGTTTCTGCCTTCACGCAGTCGCAGGAAGAACGTGACAGTGCCTACC GCGATACGGCTGACATGTACGATCGGCGCGCTGACGAGTTGGTAGCGGATGGCGCGCCGGACGATGATCTTGAGGTGTTG GAGTATCGCCAGAAGGCAAAGGATCAGCGCAGTCGAATTGGCGTATCCGGCACTCAGTTGGTAGTTGAGGATGTGGCGTC TGTTGCGGTGCCGTATGCTGCCGGGAAAGCTGCCGGGCTTCTCAGTCGCCTTTTCGGTGGCGCGGCGAAATCATCTACAT CCGCTACAGCACCTGAGCTATCGACGGAGATTGCTTCGACCTTCCGTAGTTCAAAATACTCAACTGTTGTCGTAGAGGAG CCAACAACCCTATATCGAGTATACGGGGGTAGTGCGCGAATGATTGGCGGTTTTTGGACGAGGACAAAACCTCAAGGGCC ACTACAGTCCTAA
Upstream 100 bases:
>100_bases CCCCGACACTATCAGGCGCGCTGAAGAACGTTAGGCCCTTGGGCTGCAAACGCTGCTGTTTTCCGTCTTCCTCGCCACCG TTGCCGGGCAGGCCACGGCG
Downstream 100 bases:
>100_bases TTGGATAGTGCGTTGGCGCCACAATGGGGAAATACTGCGGAAAAAGTCGTGACAATGACCGTTCCAAGAGGAACCGTAAT TTATGAGGGGGTCGCCGGAC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 190; Mature: 190
Protein sequence:
>190_residues MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMYDRRADELVADGAPDDDLEVL EYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGLLSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEE PTTLYRVYGGSARMIGGFWTRTKPQGPLQS
Sequences:
>Translated_190_residues MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMYDRRADELVADGAPDDDLEVL EYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGLLSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEE PTTLYRVYGGSARMIGGFWTRTKPQGPLQS >Mature_190_residues MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMYDRRADELVADGAPDDDLEVL EYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGLLSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEE PTTLYRVYGGSARMIGGFWTRTKPQGPLQS
Specific function: Unknown
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20605; Mature: 20605
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMY CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH DRRADELVADGAPDDDLEVLEYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGL HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCCHHHHH LSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEEPTTLYRVYGGSARMIGGFWT HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEEEECCEEC RTKPQGPLQS CCCCCCCCCC >Mature Secondary Structure MFIQPDWFDPTQPGVGTNRYSYSNNDPVNLLDPSGNQAVSAFTQSQEERDSAYRDTADMY CCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH DRRADELVADGAPDDDLEVLEYRQKAKDQRSRIGVSGTQLVVEDVASVAVPYAAGKAAGL HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHCCHHHHH LSRLFGGAAKSSTSATAPELSTEIASTFRSSKYSTVVVEEPTTLYRVYGGSARMIGGFWT HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCEEEEEECCCEEEECCEEC RTKPQGPLQS CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA