| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is dppD [H]
Identifier: 99079876
GI number: 99079876
Start: 36662
End: 37519
Strand: Reverse
Name: dppD [H]
Synonym: TM1040_0035
Alternate gene names: 99079876
Gene position: 37519-36662 (Counterclockwise)
Preceding gene: 99079877
Following gene: 99079875
Centisome position: 1.17
GC content: 58.04
Gene sequence:
>858_bases ATGAGCACACTTCTGGATATTGAAAACCTCTGGGTGAAGTTCCCGACCCGCAACGGCATCTTTGATGCGGTGCGCGGGGT GAGCTTCTCGCTTGGAAAAGAACGGCTTGGGATCGTGGGCGAAAGCGGGTCTGGTAAATCCATGACCGGGCGCGCAATCC TGCGCCTGATCCGCAAGCCAGGCATTGTTGAGGCAGGTCATATCAAGCTGCATGACACCAACCTTCTCGATCTCTCCGAG CGCGACATGCGCAAGGTGCGGGGCGAGAAGATCTCCATGGTGATGCAGGATCCGAAGTTCTCTCTTAATCCGGTTGTCAC TGTGGGCGATCAAATCATCGAAGCGTACCGGTTGCATGCCAAATCCAGCAGGGCCGAGGCGCGCAGCAAAGCGCTCGAGA TGCTTGAGGCCGTATCGATCCGCGATCCCGAGCGGGTGATGAAAGCCTATCCCCACGAGATGTCGGGCGGCATGGGCCAG CGCATCATGATCGCCATGATGTTGATTCCCAACCCGGAAATCCTAATCGCGGATGAACCGACTTCGGCCCTGGATGTATC CGTGCAGGGGCAGGTTCTGTCAATCATGGACAAGCTGGTGCGCGAGCGGGGCATGGGGCTGATTTTCATCAGTCACGATC TCAATCTGGTGTCGCAGTTCTGTGATCGCGTGCTCATCATGTATGCGGGCCGCATCATCGAGGTCTGCGACGCTGACAAG CTGCACGAGGCCAAACACCCTTATACTCAGGGGCTTTTGGGATCTTTGCCGCGGTTCGATCACCCCAAGCCACGGCTTCA GGTGCTGGATCGCGACCCCCAATGGCGCGACACTGCAAGCGTGGAGGGCAGGCCATGA
Upstream 100 bases:
>100_bases TCGCCACCATGCCCGGTCTTGCCATCTTTGCCGTTTCGCTGGCCTTCAACCTTCTGGGCGATGGTTTGCGCGATGTGCTT GATCCGAAGGATAGCAGCTC
Downstream 100 bases:
>100_bases GAACAGCCATCGATATCAAGGGGTTGAACGTCTACTTTGGGGACAGTCACAATCTCTTTCATGCCGTCAAGAATGCGTCG TTCTCGGTAGATAGCGGCGC
Product: ABC transporter related
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 285; Mature: 284
Protein sequence:
>285_residues MSTLLDIENLWVKFPTRNGIFDAVRGVSFSLGKERLGIVGESGSGKSMTGRAILRLIRKPGIVEAGHIKLHDTNLLDLSE RDMRKVRGEKISMVMQDPKFSLNPVVTVGDQIIEAYRLHAKSSRAEARSKALEMLEAVSIRDPERVMKAYPHEMSGGMGQ RIMIAMMLIPNPEILIADEPTSALDVSVQGQVLSIMDKLVRERGMGLIFISHDLNLVSQFCDRVLIMYAGRIIEVCDADK LHEAKHPYTQGLLGSLPRFDHPKPRLQVLDRDPQWRDTASVEGRP
Sequences:
>Translated_285_residues MSTLLDIENLWVKFPTRNGIFDAVRGVSFSLGKERLGIVGESGSGKSMTGRAILRLIRKPGIVEAGHIKLHDTNLLDLSE RDMRKVRGEKISMVMQDPKFSLNPVVTVGDQIIEAYRLHAKSSRAEARSKALEMLEAVSIRDPERVMKAYPHEMSGGMGQ RIMIAMMLIPNPEILIADEPTSALDVSVQGQVLSIMDKLVRERGMGLIFISHDLNLVSQFCDRVLIMYAGRIIEVCDADK LHEAKHPYTQGLLGSLPRFDHPKPRLQVLDRDPQWRDTASVEGRP >Mature_284_residues STLLDIENLWVKFPTRNGIFDAVRGVSFSLGKERLGIVGESGSGKSMTGRAILRLIRKPGIVEAGHIKLHDTNLLDLSER DMRKVRGEKISMVMQDPKFSLNPVVTVGDQIIEAYRLHAKSSRAEARSKALEMLEAVSIRDPERVMKAYPHEMSGGMGQR IMIAMMLIPNPEILIADEPTSALDVSVQGQVLSIMDKLVRERGMGLIFISHDLNLVSQFCDRVLIMYAGRIIEVCDADKL HEAKHPYTQGLLGSLPRFDHPKPRLQVLDRDPQWRDTASVEGRP
Specific function: Part of the binding-protein-dependent transport system for dipeptides. Probably responsible for energy coupling to the transport system. Expressed to facilitate adaptation to nutrient deficiency conditions, which also induce sporulation [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI42490749, Length=213, Percent_Identity=28.6384976525822, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI89111135, Length=218, Percent_Identity=28.4403669724771, Blast_Score=70, Evalue=3e-12, Organism=Homo sapiens, GI27477115, Length=212, Percent_Identity=25.4716981132075, Blast_Score=66, Evalue=3e-11, Organism=Homo sapiens, GI215820660, Length=232, Percent_Identity=29.3103448275862, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI20143975, Length=232, Percent_Identity=29.3103448275862, Blast_Score=65, Evalue=6e-11, Organism=Homo sapiens, GI42741659, Length=256, Percent_Identity=27.34375, Blast_Score=65, Evalue=8e-11, Organism=Escherichia coli, GI48994883, Length=259, Percent_Identity=47.1042471042471, Blast_Score=239, Evalue=2e-64, Organism=Escherichia coli, GI1789963, Length=269, Percent_Identity=43.1226765799257, Blast_Score=232, Evalue=2e-62, Organism=Escherichia coli, GI145693107, Length=275, Percent_Identity=44.3636363636364, Blast_Score=228, Evalue=3e-61, Organism=Escherichia coli, GI1787759, Length=265, Percent_Identity=44.9056603773585, Blast_Score=222, Evalue=2e-59, Organism=Escherichia coli, GI1788506, Length=274, Percent_Identity=44.8905109489051, Blast_Score=214, Evalue=4e-57, Organism=Escherichia coli, GI1787500, Length=267, Percent_Identity=41.9475655430712, Blast_Score=184, Evalue=4e-48, Organism=Escherichia coli, GI1787548, Length=277, Percent_Identity=35.0180505415162, Blast_Score=176, Evalue=2e-45, Organism=Escherichia coli, GI1789962, Length=265, Percent_Identity=40, Blast_Score=172, Evalue=2e-44, Organism=Escherichia coli, GI1787758, Length=269, Percent_Identity=36.8029739776952, Blast_Score=151, Evalue=6e-38, Organism=Escherichia coli, GI1789890, Length=234, Percent_Identity=36.3247863247863, Blast_Score=137, Evalue=1e-33, Organism=Escherichia coli, GI48994997, Length=257, Percent_Identity=36.1867704280156, Blast_Score=128, Evalue=5e-31, Organism=Escherichia coli, GI1787547, Length=265, Percent_Identity=30.188679245283, Blast_Score=115, Evalue=4e-27, Organism=Escherichia coli, GI1789891, Length=241, Percent_Identity=34.4398340248963, Blast_Score=112, Evalue=4e-26, Organism=Escherichia coli, GI1789032, Length=226, Percent_Identity=34.5132743362832, Blast_Score=105, Evalue=2e-24, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=30.8300395256917, Blast_Score=105, Evalue=4e-24, Organism=Escherichia coli, GI1786398, Length=275, Percent_Identity=28, Blast_Score=101, Evalue=6e-23, Organism=Escherichia coli, GI1787370, Length=254, Percent_Identity=29.5275590551181, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI87081834, Length=230, Percent_Identity=32.1739130434783, Blast_Score=95, Evalue=7e-21, Organism=Escherichia coli, GI1789672, Length=262, Percent_Identity=31.6793893129771, Blast_Score=92, Evalue=6e-20, Organism=Escherichia coli, GI1786872, Length=196, Percent_Identity=32.1428571428571, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1788761, Length=206, Percent_Identity=31.0679611650485, Blast_Score=89, Evalue=4e-19, Organism=Escherichia coli, GI1787712, Length=243, Percent_Identity=31.6872427983539, Blast_Score=89, Evalue=5e-19, Organism=Escherichia coli, GI1787089, Length=216, Percent_Identity=31.0185185185185, Blast_Score=88, Evalue=8e-19, Organism=Escherichia coli, GI1786703, Length=201, Percent_Identity=31.3432835820896, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1788644, Length=176, Percent_Identity=34.6590909090909, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1787029, Length=215, Percent_Identity=33.0232558139535, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1787105, Length=234, Percent_Identity=28.6324786324786, Blast_Score=86, Evalue=4e-18, Organism=Escherichia coli, GI1790162, Length=227, Percent_Identity=27.7533039647577, Blast_Score=82, Evalue=4e-17, Organism=Escherichia coli, GI87081791, Length=265, Percent_Identity=28.6792452830189, Blast_Score=81, Evalue=6e-17, Organism=Escherichia coli, GI1786345, Length=234, Percent_Identity=28.6324786324786, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1788450, Length=197, Percent_Identity=26.3959390862944, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI1789991, Length=237, Percent_Identity=31.2236286919831, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI1790739, Length=277, Percent_Identity=26.7148014440433, Blast_Score=75, Evalue=4e-15, Organism=Escherichia coli, GI1789873, Length=211, Percent_Identity=28.9099526066351, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1786319, Length=288, Percent_Identity=27.0833333333333, Blast_Score=72, Evalue=5e-14, Organism=Escherichia coli, GI48994943, Length=233, Percent_Identity=28.3261802575107, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1788165, Length=228, Percent_Identity=27.6315789473684, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1786803, Length=230, Percent_Identity=25.6521739130435, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI87081709, Length=205, Percent_Identity=25.8536585365854, Blast_Score=68, Evalue=8e-13, Organism=Escherichia coli, GI1790467, Length=225, Percent_Identity=26.2222222222222, Blast_Score=67, Evalue=1e-12, Organism=Escherichia coli, GI87082267, Length=193, Percent_Identity=26.4248704663212, Blast_Score=67, Evalue=2e-12, Organism=Escherichia coli, GI1789586, Length=246, Percent_Identity=26.0162601626016, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1790525, Length=224, Percent_Identity=25, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI87081782, Length=240, Percent_Identity=26.6666666666667, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787112, Length=254, Percent_Identity=25.5905511811024, Blast_Score=62, Evalue=4e-11, Organism=Escherichia coli, GI1787792, Length=246, Percent_Identity=24.390243902439, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786563, Length=234, Percent_Identity=26.4957264957265, Blast_Score=61, Evalue=8e-11, Organism=Escherichia coli, GI1786653, Length=233, Percent_Identity=28.755364806867, Blast_Score=61, Evalue=9e-11, Organism=Caenorhabditis elegans, GI25146777, Length=252, Percent_Identity=31.3492063492063, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17558664, Length=260, Percent_Identity=28.4615384615385, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI193211015, Length=241, Percent_Identity=26.5560165975104, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71996809, Length=241, Percent_Identity=26.5560165975104, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193211017, Length=241, Percent_Identity=26.5560165975104, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17541710, Length=259, Percent_Identity=26.6409266409266, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193202349, Length=240, Percent_Identity=26.6666666666667, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI193209708, Length=238, Percent_Identity=30.2521008403361, Blast_Score=75, Evalue=5e-14, Organism=Caenorhabditis elegans, GI212646699, Length=250, Percent_Identity=25.6, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI17543740, Length=247, Percent_Identity=28.7449392712551, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17569145, Length=241, Percent_Identity=29.045643153527, Blast_Score=72, Evalue=5e-13, Organism=Caenorhabditis elegans, GI17569143, Length=241, Percent_Identity=29.045643153527, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI115534520, Length=239, Percent_Identity=26.7782426778243, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI193208177, Length=242, Percent_Identity=28.9256198347107, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17567269, Length=251, Percent_Identity=27.4900398406374, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6324985, Length=244, Percent_Identity=26.2295081967213, Blast_Score=76, Evalue=7e-15, Organism=Drosophila melanogaster, GI24641565, Length=219, Percent_Identity=29.2237442922374, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI85726357, Length=255, Percent_Identity=27.843137254902, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI17136662, Length=248, Percent_Identity=27.0161290322581, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI24653245, Length=254, Percent_Identity=26.3779527559055, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI281363262, Length=254, Percent_Identity=26.3779527559055, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI28574533, Length=233, Percent_Identity=26.6094420600858, Blast_Score=66, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR010066 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 31889; Mature: 31758
Theoretical pI: Translated: 8.70; Mature: 8.70
Prosite motif: PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTLLDIENLWVKFPTRNGIFDAVRGVSFSLGKERLGIVGESGSGKSMTGRAILRLIRKP CCCCEECCHHEEECCCCCCHHHHHHCCHHHCCHHHHEEEECCCCCCCHHHHHHHHHHHCC GIVEAGHIKLHDTNLLDLSERDMRKVRGEKISMVMQDPKFSLNPVVTVGDQIIEAYRLHA CCEECCEEEEECCCEECCCHHHHHHHCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHH KSSRAEARSKALEMLEAVSIRDPERVMKAYPHEMSGGMGQRIMIAMMLIPNPEILIADEP HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCCCCCEEEEEEECCCCCEEEECCC TSALDVSVQGQVLSIMDKLVRERGMGLIFISHDLNLVSQFCDRVLIMYAGRIIEVCDADK CCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHCCCHH LHEAKHPYTQGLLGSLPRFDHPKPRLQVLDRDPQWRDTASVEGRP HHHHCCCHHHHHHHCCCCCCCCCCHHEEECCCCCCCCCCCCCCCC >Mature Secondary Structure STLLDIENLWVKFPTRNGIFDAVRGVSFSLGKERLGIVGESGSGKSMTGRAILRLIRKP CCCEECCHHEEECCCCCCHHHHHHCCHHHCCHHHHEEEECCCCCCCHHHHHHHHHHHCC GIVEAGHIKLHDTNLLDLSERDMRKVRGEKISMVMQDPKFSLNPVVTVGDQIIEAYRLHA CCEECCEEEEECCCEECCCHHHHHHHCCCCEEEEEECCCCCCCCEEEHHHHHHHHHHHHH KSSRAEARSKALEMLEAVSIRDPERVMKAYPHEMSGGMGQRIMIAMMLIPNPEILIADEP HHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHCCCCCCCEEEEEEECCCCCEEEECCC TSALDVSVQGQVLSIMDKLVRERGMGLIFISHDLNLVSQFCDRVLIMYAGRIIEVCDADK CCEEEEEECCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCHHHHHCCCHH LHEAKHPYTQGLLGSLPRFDHPKPRLQVLDRDPQWRDTASVEGRP HHHHCCCHHHHHHHCCCCCCCCCCHHEEECCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 1766370; 9384377 [H]