| Definition | Ruegeria sp. TM1040, complete genome. |
|---|---|
| Accession | NC_008044 |
| Length | 3,200,938 |
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The map label for this gene is gsiD [H]
Identifier: 99079877
GI number: 99079877
Start: 37516
End: 38433
Strand: Reverse
Name: gsiD [H]
Synonym: TM1040_0036
Alternate gene names: 99079877
Gene position: 38433-37516 (Counterclockwise)
Preceding gene: 99079878
Following gene: 99079876
Centisome position: 1.2
GC content: 61.66
Gene sequence:
>918_bases ATGAGCAGCCAGACCATGACACTTCGAGAGTGGCTCTTGACGGATACGCCAACGTCGCGCCGTCAGGCCAGGCTGGCCGC CTATTACAAAGGCTGGCTAACCTTACGGTCCAACCATATGGCGATGGGGGGGCTGGCAATCATCGTTCTGCTCGTCGCCG TTGCGATCTTTGCACCGCTTCTTGCGCCTCATGATCCCTACTATCAGGATCTTGGCAATCGGCTTCAGCCCCTGGGCACC GAAGGGCACATCCTCGGCACCGACTCGCTGGGGCGGGACATCCTGAGCCGCCTCATCTGGGGCGCACGGATCACGCTCTA CATCGTCGCACTTGTTGCCATGATCGCGCCCATCGTCGGGTTGTTGGTCGGAACGGTCTCCGGCTACGTGGGCGGCTGGG TCGACATCATGCTGATGCGGGTGACGGATATTTTCCTTGCGTTCCCACGCCTTGTGCTGGCGCTGGCCTTTGTGGCGGCG CTGGGAGCCGGGATTGAGAACGCAGTGCTGGCGATTTCACTCACGGCCTGGCCCCCCTACGCGCGTCTGGCACGGGCCGA GACGCTCACCATCCGTTCGTCGGATTTCATCAGCGCGATCCGTCTGCAAGGGGCGGGGCCGCTCCTGATCATCACCAAAC ATATCTGGCCGCTCTGTATCAGTTCGCTGATCGTGCGGGTGACACTGGATATGGCGGGGATCATTCTGGCGGCTGCGGGA CTTGGCTTTCTGGGCCTTGGCGCGCAACCTCCAAGCCCGGAATGGGGCGCGATGATCTCCGAGGGGCGCCGGTTCATTCT GGACTACTGGTGGGTCGCCACCATGCCCGGTCTTGCCATCTTTGCCGTTTCGCTGGCCTTCAACCTTCTGGGCGATGGTT TGCGCGATGTGCTTGATCCGAAGGATAGCAGCTCATGA
Upstream 100 bases:
>100_bases TGAACGCCGTGCTTGGTGGCACCGTGGTCGTCGGCCTCGTGTTCATCGTGCTGAACGTTTTTTCCGACCTCCTCTACAAA GTCTTTGATCCGAGGTCGAA
Downstream 100 bases:
>100_bases GCACACTTCTGGATATTGAAAACCTCTGGGTGAAGTTCCCGACCCGCAACGGCATCTTTGATGCGGTGCGCGGGGTGAGC TTCTCGCTTGGAAAAGAACG
Product: binding-protein-dependent transport systems inner membrane component
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 305; Mature: 304
Protein sequence:
>305_residues MSSQTMTLREWLLTDTPTSRRQARLAAYYKGWLTLRSNHMAMGGLAIIVLLVAVAIFAPLLAPHDPYYQDLGNRLQPLGT EGHILGTDSLGRDILSRLIWGARITLYIVALVAMIAPIVGLLVGTVSGYVGGWVDIMLMRVTDIFLAFPRLVLALAFVAA LGAGIENAVLAISLTAWPPYARLARAETLTIRSSDFISAIRLQGAGPLLIITKHIWPLCISSLIVRVTLDMAGIILAAAG LGFLGLGAQPPSPEWGAMISEGRRFILDYWWVATMPGLAIFAVSLAFNLLGDGLRDVLDPKDSSS
Sequences:
>Translated_305_residues MSSQTMTLREWLLTDTPTSRRQARLAAYYKGWLTLRSNHMAMGGLAIIVLLVAVAIFAPLLAPHDPYYQDLGNRLQPLGT EGHILGTDSLGRDILSRLIWGARITLYIVALVAMIAPIVGLLVGTVSGYVGGWVDIMLMRVTDIFLAFPRLVLALAFVAA LGAGIENAVLAISLTAWPPYARLARAETLTIRSSDFISAIRLQGAGPLLIITKHIWPLCISSLIVRVTLDMAGIILAAAG LGFLGLGAQPPSPEWGAMISEGRRFILDYWWVATMPGLAIFAVSLAFNLLGDGLRDVLDPKDSSS >Mature_304_residues SSQTMTLREWLLTDTPTSRRQARLAAYYKGWLTLRSNHMAMGGLAIIVLLVAVAIFAPLLAPHDPYYQDLGNRLQPLGTE GHILGTDSLGRDILSRLIWGARITLYIVALVAMIAPIVGLLVGTVSGYVGGWVDIMLMRVTDIFLAFPRLVLALAFVAAL GAGIENAVLAISLTAWPPYARLARAETLTIRSSDFISAIRLQGAGPLLIITKHIWPLCISSLIVRVTLDMAGIILAAAGL GFLGLGAQPPSPEWGAMISEGRRFILDYWWVATMPGLAIFAVSLAFNLLGDGLRDVLDPKDSSS
Specific function: Part of the ABC transporter complex gsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1787054, Length=294, Percent_Identity=43.1972789115646, Blast_Score=231, Evalue=4e-62, Organism=Escherichia coli, GI1787760, Length=288, Percent_Identity=42.3611111111111, Blast_Score=221, Evalue=5e-59, Organism=Escherichia coli, GI1789964, Length=275, Percent_Identity=46.9090909090909, Blast_Score=207, Evalue=1e-54, Organism=Escherichia coli, GI1789889, Length=243, Percent_Identity=42.3868312757202, Blast_Score=179, Evalue=2e-46, Organism=Escherichia coli, GI1787498, Length=268, Percent_Identity=35.8208955223881, Blast_Score=146, Evalue=2e-36, Organism=Escherichia coli, GI1787549, Length=269, Percent_Identity=37.1747211895911, Blast_Score=137, Evalue=6e-34, Organism=Escherichia coli, GI1788505, Length=227, Percent_Identity=26.431718061674, Blast_Score=86, Evalue=3e-18,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 32889; Mature: 32758
Theoretical pI: Translated: 8.95; Mature: 8.95
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSQTMTLREWLLTDTPTSRRQARLAAYYKGWLTLRSNHMAMGGLAIIVLLVAVAIFAPL CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH LAPHDPYYQDLGNRLQPLGTEGHILGTDSLGRDILSRLIWGARITLYIVALVAMIAPIVG HCCCCCHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVGTVSGYVGGWVDIMLMRVTDIFLAFPRLVLALAFVAALGAGIENAVLAISLTAWPPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH ARLARAETLTIRSSDFISAIRLQGAGPLLIITKHIWPLCISSLIVRVTLDMAGIILAAAG HHHHHHHEEEEECHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGFLGLGAQPPSPEWGAMISEGRRFILDYWWVATMPGLAIFAVSLAFNLLGDGLRDVLDP HHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC KDSSS CCCCC >Mature Secondary Structure SSQTMTLREWLLTDTPTSRRQARLAAYYKGWLTLRSNHMAMGGLAIIVLLVAVAIFAPL CCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHH LAPHDPYYQDLGNRLQPLGTEGHILGTDSLGRDILSRLIWGARITLYIVALVAMIAPIVG HCCCCCHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LLVGTVSGYVGGWVDIMLMRVTDIFLAFPRLVLALAFVAALGAGIENAVLAISLTAWPPY HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCH ARLARAETLTIRSSDFISAIRLQGAGPLLIITKHIWPLCISSLIVRVTLDMAGIILAAAG HHHHHHHEEEEECHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LGFLGLGAQPPSPEWGAMISEGRRFILDYWWVATMPGLAIFAVSLAFNLLGDGLRDVLDP HHHCCCCCCCCCCHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCC KDSSS CCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]