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The map label for this gene is soxC [H]

Identifier: 104779490

GI number: 104779490

Start: 211347

End: 212528

Strand: Reverse

Name: soxC [H]

Synonym: PSEEN0202

Alternate gene names: 104779490

Gene position: 212528-211347 (Counterclockwise)

Preceding gene: 104779491

Following gene: 104779489

Centisome position: 3.61

GC content: 68.7

Gene sequence:

>1182_bases
ATGACTGCATCCCTCATCACCAGCGACGCCCAGGCCCTGGCCGTCGCCGAAGAAATCGCCCAATCACTGCGCCACGACAG
CGCCGCGCGCGACCGCGAGCGCCGCCTGCCCCACGCCGAACTCGACCACTTCGTGCAGACCGGCCTGTGGGGCATCAGCG
TGCCCAAGGCCTACGGCGGCGCCGGCGTATCCAGCGCCACCCTGGCCAAGGTCATCGCCCGCATCGCCCAGGCCGACGCC
TCGATCGGACAGATCCCGCAGAACCACTTCTACGCCCTGGAAGTGCTGCGGGTGAACGGCACCCCGGAGCAACAGAAGCG
CCTGTACGCAGAAGTGCTCGCCGGCCGCCGCTTCGGCAACGCCCTGGCCGAGATCGGTACCAAGAACGCCCATGAGCGCA
CCACTCGGCTGACCCGTGACGGCGATCATTTCCGCATCGATGGCCGCAAGTTCTACTGCACCGGCGCCCTCTACGCCCAG
CGCATCCCGACCCTGGTGATCGACGAACAAGGGGTTTCACACCTGGCCTTCGTACCCGCCGACACCTCGGGCATCGAGGT
GATCGACGACTGGAGCGGCTTCGGTCAGCGCACCACCGGCAGCGGTTCTGTGGTGTTCACCAACGTGTTCGTCCGTGCCG
AGGACGTGGTGCCGTTCCAGAGCGCCTTCGATCGCCCGACCACCGTCGGCCCGCTGGCGCAGATCCTCCACGCCGCCATC
GACACCGGCATCGCCCGCGCCGCCTTCGAGGACGCCCTGCACTTCGTGCGCACCCGTAGCCGCCCCTGGATCGATTCGGG
CCTCGACAAGGCCAGCGACGACCCGCTCACCCTGAAGAGCTTCGGCCACCTGGCGATCCGCCTGCACGCCACCGAGGCCC
TGCTGGAGCGCGCCGGCGAGATCCTTGACATCGCCCAGGCCGACAGCAACGTCGAGACCCTGGCCGCCGCCTCAATCGCC
GTGGCCGAGGCCCGGGCAATCAGCACCGAGATCTCGCTCGCCGCCGGCACCACTCTGTTCGAGCTGGCCGGCAGCCAGGC
CACCCTGGCCGAGCACAACCTCGACCGCCACTGGCGCAACGCTCGGGTGCACACCCTGCACGACCCGGTGCGCTGGAAGT
ACCACGCCATCGGCAACTACTACCTCAACGACGAGAAGCCACCGCGCCGGGGGACCATCTGA

Upstream 100 bases:

>100_bases
CATTCCTGGATCTGATTCAAGGCCCTTCGCCGTCAAACCGGACCCTACGCGATCCCCGTAGGAGCCGGCTTGCCGGCGAA
CAGCCCCTGCGGAGAGCACC

Downstream 100 bases:

>100_bases
TGGCCCGCCAGATCCTGCTCAATGCCTTCAACATGAACTGCATCGGGCACATCAACCATGGCCTGTGGACCCACCCACGG
GACACCTCGACCCAGTACAA

Product: acyl-CoA dehydrogenase

Products: gamma-butyrobetaine; Acceptor; gamma-butyrobetainyl-CoA [C]

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 393; Mature: 392

Protein sequence:

>393_residues
MTASLITSDAQALAVAEEIAQSLRHDSAARDRERRLPHAELDHFVQTGLWGISVPKAYGGAGVSSATLAKVIARIAQADA
SIGQIPQNHFYALEVLRVNGTPEQQKRLYAEVLAGRRFGNALAEIGTKNAHERTTRLTRDGDHFRIDGRKFYCTGALYAQ
RIPTLVIDEQGVSHLAFVPADTSGIEVIDDWSGFGQRTTGSGSVVFTNVFVRAEDVVPFQSAFDRPTTVGPLAQILHAAI
DTGIARAAFEDALHFVRTRSRPWIDSGLDKASDDPLTLKSFGHLAIRLHATEALLERAGEILDIAQADSNVETLAAASIA
VAEARAISTEISLAAGTTLFELAGSQATLAEHNLDRHWRNARVHTLHDPVRWKYHAIGNYYLNDEKPPRRGTI

Sequences:

>Translated_393_residues
MTASLITSDAQALAVAEEIAQSLRHDSAARDRERRLPHAELDHFVQTGLWGISVPKAYGGAGVSSATLAKVIARIAQADA
SIGQIPQNHFYALEVLRVNGTPEQQKRLYAEVLAGRRFGNALAEIGTKNAHERTTRLTRDGDHFRIDGRKFYCTGALYAQ
RIPTLVIDEQGVSHLAFVPADTSGIEVIDDWSGFGQRTTGSGSVVFTNVFVRAEDVVPFQSAFDRPTTVGPLAQILHAAI
DTGIARAAFEDALHFVRTRSRPWIDSGLDKASDDPLTLKSFGHLAIRLHATEALLERAGEILDIAQADSNVETLAAASIA
VAEARAISTEISLAAGTTLFELAGSQATLAEHNLDRHWRNARVHTLHDPVRWKYHAIGNYYLNDEKPPRRGTI
>Mature_392_residues
TASLITSDAQALAVAEEIAQSLRHDSAARDRERRLPHAELDHFVQTGLWGISVPKAYGGAGVSSATLAKVIARIAQADAS
IGQIPQNHFYALEVLRVNGTPEQQKRLYAEVLAGRRFGNALAEIGTKNAHERTTRLTRDGDHFRIDGRKFYCTGALYAQR
IPTLVIDEQGVSHLAFVPADTSGIEVIDDWSGFGQRTTGSGSVVFTNVFVRAEDVVPFQSAFDRPTTVGPLAQILHAAID
TGIARAAFEDALHFVRTRSRPWIDSGLDKASDDPLTLKSFGHLAIRLHATEALLERAGEILDIAQADSNVETLAAASIAV
AEARAISTEISLAAGTTLFELAGSQATLAEHNLDRHWRNARVHTLHDPVRWKYHAIGNYYLNDEKPPRRGTI

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI4501859, Length=355, Percent_Identity=22.8169014084507, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI4557233, Length=357, Percent_Identity=23.5294117647059, Blast_Score=67, Evalue=2e-11,
Organism=Drosophila melanogaster, GI21356377, Length=360, Percent_Identity=24.1666666666667, Blast_Score=71, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.- [C]

Molecular weight: Translated: 42835; Mature: 42703

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.3 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASLITSDAQALAVAEEIAQSLRHDSAARDRERRLPHAELDHFVQTGLWGISVPKAYGG
CCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
AGVSSATLAKVIARIAQADASIGQIPQNHFYALEVLRVNGTPEQQKRLYAEVLAGRRFGN
CCCCHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCHHHH
ALAEIGTKNAHERTTRLTRDGDHFRIDGRKFYCTGALYAQRIPTLVIDEQGVSHLAFVPA
HHHHHCCCCHHHHHHHHCCCCCEEEECCEEEEEECHHHHHHCCEEEEECCCCCEEEEECC
DTSGIEVIDDWSGFGQRTTGSGSVVFTNVFVRAEDVVPFQSAFDRPTTVGPLAQILHAAI
CCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHH
DTGIARAAFEDALHFVRTRSRPWIDSGLDKASDDPLTLKSFGHLAIRLHATEALLERAGE
HHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHCCH
ILDIAQADSNVETLAAASIAVAEARAISTEISLAAGTTLFELAGSQATLAEHNLDRHWRN
HEEHHHCCCCHHHHHHHHHHHHHHHHHHHHEEHHCCCHHHHHCCCCHHHHHHHHHHHHHC
ARVHTLHDPVRWKYHAIGNYYLNDEKPPRRGTI
CCEEEECCCCCEEEEECCCEEECCCCCCCCCCC
>Mature Secondary Structure 
TASLITSDAQALAVAEEIAQSLRHDSAARDRERRLPHAELDHFVQTGLWGISVPKAYGG
CCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCC
AGVSSATLAKVIARIAQADASIGQIPQNHFYALEVLRVNGTPEQQKRLYAEVLAGRRFGN
CCCCHHHHHHHHHHHHHHCCHHHCCCCCCEEEEEEEEECCCCHHHHHHHHHHHHCCHHHH
ALAEIGTKNAHERTTRLTRDGDHFRIDGRKFYCTGALYAQRIPTLVIDEQGVSHLAFVPA
HHHHHCCCCHHHHHHHHCCCCCEEEECCEEEEEECHHHHHHCCEEEEECCCCCEEEEECC
DTSGIEVIDDWSGFGQRTTGSGSVVFTNVFVRAEDVVPFQSAFDRPTTVGPLAQILHAAI
CCCCCEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCCHHHHCCCCCCHHHHHHHHHHHH
DTGIARAAFEDALHFVRTRSRPWIDSGLDKASDDPLTLKSFGHLAIRLHATEALLERAGE
HHHHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCEEEECCCCEEEEEEHHHHHHHHCCH
ILDIAQADSNVETLAAASIAVAEARAISTEISLAAGTTLFELAGSQATLAEHNLDRHWRN
HEEHHHCCCCHHHHHHHHHHHHHHHHHHHHEEHHCCCHHHHHCCCCHHHHHHHHHHHHHC
ARVHTLHDPVRWKYHAIGNYYLNDEKPPRRGTI
CCEEEECCCCCEEEEECCCEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: crotono-betaine; reduced acceptor; crotonobetainyl-CoA [C]

Specific reaction: reduced acceptor + crotono-betaine = Acceptor + gamma-butyrobetaine reduced acceptor + crotonobetainyl-CoA = Acceptor + gamma-butyrobetainyl-CoA [C]

General reaction: Oxidoreductases; Acting on the CH-CH group of donors; With other acceptors [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]