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The map label for this gene is soxC [H]

Identifier: 104779491

GI number: 104779491

Start: 212614

End: 213855

Strand: Reverse

Name: soxC [H]

Synonym: PSEEN0203

Alternate gene names: 104779491

Gene position: 213855-212614 (Counterclockwise)

Preceding gene: 104779492

Following gene: 104779490

Centisome position: 3.63

GC content: 68.52

Gene sequence:

>1242_bases
ATGTCCAGCCAGCCAACTACCCAATTCCACAGCGATATCGACAGCTCGCCCCTGCTGCTGCCGGCCAAAGTGCTGCGCAA
CGACGAAGAGGCCCTGCAGGCCGCCCGCGAGCTGGCCCAGGTGGCCCGCCAACAGGCCGCCCGCCGTGACCAGCAGCGCA
AGCTGCCGTGGGCCGAGATCGAACAGTTCACCCGCAGCGGCCTGGGCAGCATCAGCGTGCCCAAGGCCTTCGGCGGCCCC
GAGGTCTCCTACGCCACCATCGCTGAAGTCTTCCGACTGATCAGCGCCGCCGACCCGGCATTGGGGCAGATCCCGCAAAA
CCAGTTCGGCATTCTCCAACTGGTGCGCCTGACGGCCACCGAAGCACAGCAGGAAGCGATTTTCCGTGCCGTGCTCGACG
GCTGGCGCATCGGTAATGCCGGCCCCGAGCGTGGCACCAAGGACACGCTCACGCTCAAGGCCCGCATCACCCGCGACGGC
GAGGGCTATCGCATCAGCGGCGAGAAGTTCTATTCCACCGGCGCCCTGTACGCCCACTGGGTGGCGGTCAAGGCCCTGGA
CGACGAGGGGCGCCAGCGCCTGGCATTCGTTCGCCGGGGCAGCCCGGGGTTGCGCATCGTCGACGACTGGTCCGGCTTCG
GCCAGCGCACCACCGCCAGCGGTACCGTGCTGCTCGACCAGGTGCCGGTGGACGCCGACCTGGTCATCGATAACTGGCGC
CATCGGGAGCAACCCAGCACCCAGGGTGCGGCCTCGCAACTGATCCAGGCCGCCATCGACGCCGGCATCGCCGAGGCGGC
CATCGACGACGCGATCCAGTTCGTGCGTGAGAAATCGCGGCCATGGATCGAGGCCAAGGTCGAGCGCAACAGCGACGACC
CCTACGTGATCGCCGACATCGGCCGCCTCAAACTCGACCTGCACGCCGCCGAAGCGCTGCTGCGCAAGGCCGCGAAGGTG
CTCGACGAGGTCAACGCCGGGCCCGTCGACGATGCCGCCGCCGCGCGGGCGTCGATCGCCGTGGCTGAAGCCAAGGTGCT
CACCACCGAGATCTCGCTGCAGGCCAGCGAGAAACTCTTCGAGCTGGCCGGCAGCCGCGCCAGCCTGGCCGAGTTCAACC
TCGACCGGCACTGGCGCAACGCCCGGGTGCACACCCTGCACGACCCGGTGCGCTGGAAGTACCACGCCGTCGGCGCCTAC
TACCTCAACGGCACCCTGCCTGCCCGCCATTCCTGGATCTGA

Upstream 100 bases:

>100_bases
GAGGCGGCACATTCAACTTTGTGAGGTAAGGAATGGTCAGGATCACAATCACCCCAGTGGCCAACGCCAGGGCATTGAGT
GCAGCCAAGGAGCGGTACTG

Downstream 100 bases:

>100_bases
TTCAAGGCCCTTCGCCGTCAAACCGGACCCTACGCGATCCCCGTAGGAGCCGGCTTGCCGGCGAACAGCCCCTGCGGAGA
GCACCATGACTGCATCCCTC

Product: acyl-CoA dehydrogenase

Products: NA

Alternate protein names: DBT sulfur dioxygenase [H]

Number of amino acids: Translated: 413; Mature: 412

Protein sequence:

>413_residues
MSSQPTTQFHSDIDSSPLLLPAKVLRNDEEALQAARELAQVARQQAARRDQQRKLPWAEIEQFTRSGLGSISVPKAFGGP
EVSYATIAEVFRLISAADPALGQIPQNQFGILQLVRLTATEAQQEAIFRAVLDGWRIGNAGPERGTKDTLTLKARITRDG
EGYRISGEKFYSTGALYAHWVAVKALDDEGRQRLAFVRRGSPGLRIVDDWSGFGQRTTASGTVLLDQVPVDADLVIDNWR
HREQPSTQGAASQLIQAAIDAGIAEAAIDDAIQFVREKSRPWIEAKVERNSDDPYVIADIGRLKLDLHAAEALLRKAAKV
LDEVNAGPVDDAAAARASIAVAEAKVLTTEISLQASEKLFELAGSRASLAEFNLDRHWRNARVHTLHDPVRWKYHAVGAY
YLNGTLPARHSWI

Sequences:

>Translated_413_residues
MSSQPTTQFHSDIDSSPLLLPAKVLRNDEEALQAARELAQVARQQAARRDQQRKLPWAEIEQFTRSGLGSISVPKAFGGP
EVSYATIAEVFRLISAADPALGQIPQNQFGILQLVRLTATEAQQEAIFRAVLDGWRIGNAGPERGTKDTLTLKARITRDG
EGYRISGEKFYSTGALYAHWVAVKALDDEGRQRLAFVRRGSPGLRIVDDWSGFGQRTTASGTVLLDQVPVDADLVIDNWR
HREQPSTQGAASQLIQAAIDAGIAEAAIDDAIQFVREKSRPWIEAKVERNSDDPYVIADIGRLKLDLHAAEALLRKAAKV
LDEVNAGPVDDAAAARASIAVAEAKVLTTEISLQASEKLFELAGSRASLAEFNLDRHWRNARVHTLHDPVRWKYHAVGAY
YLNGTLPARHSWI
>Mature_412_residues
SSQPTTQFHSDIDSSPLLLPAKVLRNDEEALQAARELAQVARQQAARRDQQRKLPWAEIEQFTRSGLGSISVPKAFGGPE
VSYATIAEVFRLISAADPALGQIPQNQFGILQLVRLTATEAQQEAIFRAVLDGWRIGNAGPERGTKDTLTLKARITRDGE
GYRISGEKFYSTGALYAHWVAVKALDDEGRQRLAFVRRGSPGLRIVDDWSGFGQRTTASGTVLLDQVPVDADLVIDNWRH
REQPSTQGAASQLIQAAIDAGIAEAAIDDAIQFVREKSRPWIEAKVERNSDDPYVIADIGRLKLDLHAAEALLRKAAKVL
DEVNAGPVDDAAAARASIAVAEAKVLTTEISLQASEKLFELAGSRASLAEFNLDRHWRNARVHTLHDPVRWKYHAVGAYY
LNGTLPARHSWI

Specific function: Part of a pathway to remove covalently bound sulfur from dibenzothiophene (DBT) without breaking carbon-carbon bonds. Sulfur dioxygenase which converts DBT to DBT-sulfone (DBTO2 or DBT 5,5-dioxide) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Caenorhabditis elegans, GI17508101, Length=405, Percent_Identity=21.4814814814815, Blast_Score=76, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17569725, Length=370, Percent_Identity=20.5405405405405, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 45405; Mature: 45273

Theoretical pI: Translated: 6.81; Mature: 6.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSQPTTQFHSDIDSSPLLLPAKVLRNDEEALQAARELAQVARQQAARRDQQRKLPWAEI
CCCCCCCHHHHCCCCCCCEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EQFTRSGLGSISVPKAFGGPEVSYATIAEVFRLISAADPALGQIPQNQFGILQLVRLTAT
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHH
EAQQEAIFRAVLDGWRIGNAGPERGTKDTLTLKARITRDGEGYRISGEKFYSTGALYAHW
HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHCCCCCHHHHH
VAVKALDDEGRQRLAFVRRGSPGLRIVDDWSGFGQRTTASGTVLLDQVPVDADLVIDNWR
HEEEEECCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCC
HREQPSTQGAASQLIQAAIDAGIAEAAIDDAIQFVREKSRPWIEAKVERNSDDPYVIADI
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEC
GRLKLDLHAAEALLRKAAKVLDEVNAGPVDDAAAARASIAVAEAKVLTTEISLQASEKLF
CCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHHHHH
ELAGSRASLAEFNLDRHWRNARVHTLHDPVRWKYHAVGAYYLNGTLPARHSWI
HHCCCCCHHHHHCCHHHHCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCC
>Mature Secondary Structure 
SSQPTTQFHSDIDSSPLLLPAKVLRNDEEALQAARELAQVARQQAARRDQQRKLPWAEI
CCCCCCHHHHCCCCCCCEECHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
EQFTRSGLGSISVPKAFGGPEVSYATIAEVFRLISAADPALGQIPQNQFGILQLVRLTAT
HHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCHHHHHHHHHHHHH
EAQQEAIFRAVLDGWRIGNAGPERGTKDTLTLKARITRDGEGYRISGEKFYSTGALYAHW
HHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCCCEEECCCHHCCCCCHHHHH
VAVKALDDEGRQRLAFVRRGSPGLRIVDDWSGFGQRTTASGTVLLDQVPVDADLVIDNWR
HEEEEECCCCHHHHHHHCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCEEEECCCC
HREQPSTQGAASQLIQAAIDAGIAEAAIDDAIQFVREKSRPWIEAKVERNSDDPYVIADI
CCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCEEEEEC
GRLKLDLHAAEALLRKAAKVLDEVNAGPVDDAAAARASIAVAEAKVLTTEISLQASEKLF
CCEEEHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHEEEEEHHHHHHHHHH
ELAGSRASLAEFNLDRHWRNARVHTLHDPVRWKYHAVGAYYLNGTLPARHSWI
HHCCCCCHHHHHCCHHHHCCCCEEEECCCCCEEEEEEEEEEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7961424; 7574582 [H]