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The map label for this gene is sun [H]

Identifier: 104779336

GI number: 104779336

Start: 23900

End: 25210

Strand: Reverse

Name: sun [H]

Synonym: PSEEN0023

Alternate gene names: 104779336

Gene position: 25210-23900 (Counterclockwise)

Preceding gene: 104779337

Following gene: 104779335

Centisome position: 0.43

GC content: 69.95

Gene sequence:

>1311_bases
ATGAACCCACGCCTGGCCGCCGCCCGTGCCCTTGCCGCCGTGCTCAGCGGCAAGGCCTCGCTGAACAGCTCGCTGCCGGC
GCAACTGGACAAGGTCGACGAGCGCGACCGTGGCCTGACCCAGGACCTAGCCTTCGGCACCGCCCGCTGGCAGCCACGCC
TGGACCTGCTGGCCGCGCAACTGCTGCAGAAGCCGTTCAAGGCCGCCGATGCCGATGTGCAGGCGCTGCTGCTGGTCGGC
CTGTACCAGCTGTTCTACACGCGCATCCCGGCACACGCCGCCCTCGGCGAGACCGTCGGCTGCGCCGACAAGCTCAAGAA
GCCATGGGCCAAGGGCCTGCTCAACGCCGTGCTGCGCCGCGCCCAGCGTGAAGGCGAGGAACTGCTCGCCAGCATGGAAC
GCGACCCGGTGGTGCGCACCGCCCACCCGCGCTGGCTGCAGAAGTCGCTGAAAGCCTTCTGGCCGGAGCAGTGGGAAGCC
ATCTGCGCCGCCAACAACGCCCACCCGCCGATGATTCTGCGGGTCAATCGCCGCCACCACAGCCGTGACGCCTACCTGTC
GTTGCTGGCCGAGGCCGGCATCCAGGCCAGCGCCTGCCAGTTCAGCCGTGACGGCATCGTCCTGGCCGAAGCCTGCGACG
TGCGTGGCCTGCCGGGCTTCGCCGACGGTTGGGTGAGCGTGCAGGACGAAGCCGCGCAGCTGTCCGCCGACCTGCTGGAA
CTGGCCCCCGGCCAGCGCGTGCTCGACGCCTGCTGCGCCCCGGGCGGCAAGACCTGCCACCTACTGGAAGCCGAACCCGG
CCTGGCCCACATGGTCGCCATCGACCTGGAAGCCAAGCGACTGGCCCGCGTGCGCGAGAACCTCGACCGCCTGAAGCTCG
ACGCGGAGCTGATCGCCTGCGACGCCCGTGACACCGCCAGCTGGTGGGACGGCAAGCCATTCCAGCGCATCCTGCTCGAC
GCGCCATGCTCGGCCACCGGTGTGATCCGCCGTCACCCGGACATCAAGCTGACCCGTCAGGCCGAGGACATCCCGGCCCT
GGCCACGCTGCAAGGCGAGCTGCTCGATGCCCTGTGGCCGACCCTGGAAGTGGGCGGCATGTTGCTCTACGCCACCTGCT
CGAGCCTGCCGACCGAGAACACCGAAGTGATCGACGCCTTCCTCGCCCGCACCCCCGGTGCCCGCGAGCTGGACCTGGCC
ACCGAAGCCGGCCTGCGCCAGCCCCACGGCCGCCAGCTGCTGGCCCAGGAAGGCGGCCATGACGGGTTCTATTACGCCAA
ACTGATCAAGATCGCCGCTTCGCGCGGGTAA

Upstream 100 bases:

>100_bases
GCCTGACCCGCCTGCAACTGCCCGGCGGCAAGGCCCTGGCCTTCAGCGACCTGTTCAACAGCCGCCGCGAGAAGTTCGCC
GGTGGCAAGGTGCTCGGCCA

Downstream 100 bases:

>100_bases
GAACAAAAAGGGTAGGGAGTAGCGGATGAAGATCATCATCCTCGGCGCAGGGCAGGTGGGCGGCACGCTGGCGGAACACC
TGGCCAGCGAAGCCAACGAC

Product: ribosomal RNA small subunit methyltransferase B (rRNA (cytosine-C(5)-)-methyltransferase) (16S rRNA m5C967 methyltransferase)

Products: NA

Alternate protein names: 16S rRNA m5C967 methyltransferase; rRNA (cytosine-C(5)-)-methyltransferase rsmB [H]

Number of amino acids: Translated: 436; Mature: 436

Protein sequence:

>436_residues
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADADVQALLLVG
LYQLFYTRIPAHAALGETVGCADKLKKPWAKGLLNAVLRRAQREGEELLASMERDPVVRTAHPRWLQKSLKAFWPEQWEA
ICAANNAHPPMILRVNRRHHSRDAYLSLLAEAGIQASACQFSRDGIVLAEACDVRGLPGFADGWVSVQDEAAQLSADLLE
LAPGQRVLDACCAPGGKTCHLLEAEPGLAHMVAIDLEAKRLARVRENLDRLKLDAELIACDARDTASWWDGKPFQRILLD
APCSATGVIRRHPDIKLTRQAEDIPALATLQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIDAFLARTPGARELDLA
TEAGLRQPHGRQLLAQEGGHDGFYYAKLIKIAASRG

Sequences:

>Translated_436_residues
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADADVQALLLVG
LYQLFYTRIPAHAALGETVGCADKLKKPWAKGLLNAVLRRAQREGEELLASMERDPVVRTAHPRWLQKSLKAFWPEQWEA
ICAANNAHPPMILRVNRRHHSRDAYLSLLAEAGIQASACQFSRDGIVLAEACDVRGLPGFADGWVSVQDEAAQLSADLLE
LAPGQRVLDACCAPGGKTCHLLEAEPGLAHMVAIDLEAKRLARVRENLDRLKLDAELIACDARDTASWWDGKPFQRILLD
APCSATGVIRRHPDIKLTRQAEDIPALATLQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIDAFLARTPGARELDLA
TEAGLRQPHGRQLLAQEGGHDGFYYAKLIKIAASRG
>Mature_436_residues
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQLLQKPFKAADADVQALLLVG
LYQLFYTRIPAHAALGETVGCADKLKKPWAKGLLNAVLRRAQREGEELLASMERDPVVRTAHPRWLQKSLKAFWPEQWEA
ICAANNAHPPMILRVNRRHHSRDAYLSLLAEAGIQASACQFSRDGIVLAEACDVRGLPGFADGWVSVQDEAAQLSADLLE
LAPGQRVLDACCAPGGKTCHLLEAEPGLAHMVAIDLEAKRLARVRENLDRLKLDAELIACDARDTASWWDGKPFQRILLD
APCSATGVIRRHPDIKLTRQAEDIPALATLQGELLDALWPTLEVGGMLLYATCSSLPTENTEVIDAFLARTPGARELDLA
TEAGLRQPHGRQLLAQEGGHDGFYYAKLIKIAASRG

Specific function: Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA [H]

COG id: COG0144

COG function: function code J; tRNA and rRNA cytosine-C5-methylases

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmB/NOP family [H]

Homologues:

Organism=Homo sapiens, GI76150625, Length=340, Percent_Identity=30.2941176470588, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI76150623, Length=340, Percent_Identity=30.2941176470588, Blast_Score=120, Evalue=3e-27,
Organism=Homo sapiens, GI32698918, Length=181, Percent_Identity=29.2817679558011, Blast_Score=80, Evalue=5e-15,
Organism=Homo sapiens, GI8922322, Length=202, Percent_Identity=34.1584158415842, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI270288816, Length=202, Percent_Identity=34.1584158415842, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI270288818, Length=202, Percent_Identity=34.1584158415842, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI23199998, Length=202, Percent_Identity=34.1584158415842, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI301336155, Length=201, Percent_Identity=29.8507462686567, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI39995082, Length=201, Percent_Identity=29.8507462686567, Blast_Score=69, Evalue=1e-11,
Organism=Homo sapiens, GI11545785, Length=167, Percent_Identity=33.5329341317365, Blast_Score=66, Evalue=8e-11,
Organism=Escherichia coli, GI2367212, Length=431, Percent_Identity=49.6519721577726, Blast_Score=385, Evalue=1e-108,
Organism=Escherichia coli, GI87081985, Length=280, Percent_Identity=28.2142857142857, Blast_Score=76, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17536757, Length=337, Percent_Identity=27.0029673590504, Blast_Score=108, Evalue=8e-24,
Organism=Caenorhabditis elegans, GI115534021, Length=180, Percent_Identity=30, Blast_Score=70, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71998419, Length=180, Percent_Identity=30, Blast_Score=70, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI25143471, Length=206, Percent_Identity=29.6116504854369, Blast_Score=68, Evalue=9e-12,
Organism=Saccharomyces cerevisiae, GI6324268, Length=313, Percent_Identity=27.1565495207668, Blast_Score=99, Evalue=1e-21,
Organism=Saccharomyces cerevisiae, GI6319447, Length=311, Percent_Identity=26.6881028938907, Blast_Score=73, Evalue=7e-14,
Organism=Drosophila melanogaster, GI22024126, Length=346, Percent_Identity=27.1676300578035, Blast_Score=104, Evalue=1e-22,
Organism=Drosophila melanogaster, GI21355201, Length=194, Percent_Identity=31.4432989690722, Blast_Score=82, Evalue=1e-15,
Organism=Drosophila melanogaster, GI19920494, Length=198, Percent_Identity=29.7979797979798, Blast_Score=78, Evalue=1e-14,
Organism=Drosophila melanogaster, GI21356513, Length=189, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24668781, Length=189, Percent_Identity=29.6296296296296, Blast_Score=71, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001678
- InterPro:   IPR018314
- InterPro:   IPR006027
- InterPro:   IPR004573 [H]

Pfam domain/function: PF01189 Nol1_Nop2_Fmu; PF01029 NusB [H]

EC number: =2.1.1.176 [H]

Molecular weight: Translated: 47542; Mature: 47542

Theoretical pI: Translated: 6.84; Mature: 6.84

Prosite motif: PS01153 NOL1_NOP2_SUN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQ
CCCHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHH
LLQKPFKAADADVQALLLVGLYQLFYTRIPAHAALGETVGCADKLKKPWAKGLLNAVLRR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHCCHHHHHHHHHHHHHHHHHHH
AQREGEELLASMERDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHH
HHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCC
SRDAYLSLLAEAGIQASACQFSRDGIVLAEACDVRGLPGFADGWVSVQDEAAQLSADLLE
CHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHH
LAPGQRVLDACCAPGGKTCHLLEAEPGLAHMVAIDLEAKRLARVRENLDRLKLDAELIAC
HCCCHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCHHHEEE
DARDTASWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQAEDIPALATLQGELLDALWP
CCCCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCHHHHHHHHHHHHHHH
TLEVGGMLLYATCSSLPTENTEVIDAFLARTPGARELDLATEAGLRQPHGRQLLAQEGGH
HHHHCCEEEEEEHHCCCCCCHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCCHHHHHCCCC
DGFYYAKLIKIAASRG
CCHHHHHHHHHHHCCC
>Mature Secondary Structure
MNPRLAAARALAAVLSGKASLNSSLPAQLDKVDERDRGLTQDLAFGTARWQPRLDLLAAQ
CCCHHHHHHHHHHHHHCCHHCCCCCCHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHH
LLQKPFKAADADVQALLLVGLYQLFYTRIPAHAALGETVGCADKLKKPWAKGLLNAVLRR
HHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHCCHHCCHHHHHHHHHHHHHHHHHHH
AQREGEELLASMERDPVVRTAHPRWLQKSLKAFWPEQWEAICAANNAHPPMILRVNRRHH
HHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCC
SRDAYLSLLAEAGIQASACQFSRDGIVLAEACDVRGLPGFADGWVSVQDEAAQLSADLLE
CHHHHHHHHHHCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHH
LAPGQRVLDACCAPGGKTCHLLEAEPGLAHMVAIDLEAKRLARVRENLDRLKLDAELIAC
HCCCHHHHHHHCCCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCHHHEEE
DARDTASWWDGKPFQRILLDAPCSATGVIRRHPDIKLTRQAEDIPALATLQGELLDALWP
CCCCCCCCCCCCHHHHHHHCCCCCCCCCEEECCCCEEECCCCCCCHHHHHHHHHHHHHHH
TLEVGGMLLYATCSSLPTENTEVIDAFLARTPGARELDLATEAGLRQPHGRQLLAQEGGH
HHHHCCEEEEEEHHCCCCCCHHHHHHHHHCCCCCCEEHHHHHHCCCCCCCCHHHHHCCCC
DGFYYAKLIKIAASRG
CCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]