| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
Click here to switch to the map view.
The map label for this gene is apgM
Identifier: 94986331
GI number: 94986331
Start: 2352130
End: 2353356
Strand: Reverse
Name: apgM
Synonym: Dgeo_2232
Alternate gene names: 94986331
Gene position: 2353356-2352130 (Counterclockwise)
Preceding gene: 94986332
Following gene: 94986328
Centisome position: 95.39
GC content: 64.06
Gene sequence:
>1227_bases ATGGATCTGATCGAGACCGTGCGCCCCCTTGCCAAAAAGACCGACAGCAAGATTTTGATGGTCGTACTGGACGGTGTGGG CGGCCTGCCCCTCACCGTGAATGGTGAGACTGAACTGGCAACGGCAAAGACACCTCATCTCGACGCGTTGGCTGCAGAAT CGCAGCTGGGTCTGGTCGAGCTCGTTGCCGCGGGCATCACGCCGGGCAGCGGCCCCGGCCACCTTAGCCTCTTCGGGTAC GATCCGCTCAAATACGTGGTGGGGCGCGGAGCCTTGTCTGCAGTCGGCATCGGCGTGAAACTGAATGCAGGGGACGTCGC GGTGCGCGGCAATTTTGCCTCGCTTGGTGAGAGCCGCCTGATCATCGATCGCCGCGCGGGCCGCCCCAGCAATGAGAAAA ACGCTGAGGTCGTGGCCAAGCTCCGCGCTGCCATCCCCGAGATTGACGGGACCCCAGTGGAGATCTACAGCGAGTCCGAG CACCGTTTTGTGGTTGTGTTCCGGGCAACCGGGACGCCGCTGGGTGCGGACGTGAGCGACGTGGACCCGCAAGTGACCGG TGTGCCGCCGCGCACCGCCATGGCCCACGATCCCGCCAGCGAGCGCACTGCCCACCTGGTCAACGCATTTGTGACCCGCG CCGAGGCTGCGCTGGCAGACGAGTCGCAGGTGAACGGCGTGCTGTTCCGAGGCTATAGCGACGTACCCCACTTTCCCAAC TTCGACGAGATCTATCAGCTGCGGGCCGCCTGCATCGCCTCTTACCCGATGTACAAGGGCCTGGCCAGCCTGGTTGGGAT GGACGTGCTGCCGGTCGAGGGCGAGGAGGACGCCCTGGCAGGCAAGGTTGCTGCGCTCAAGGAGCACTGGCACGACTATG ACTTCTTCTACTGGCACGTCAAGAAGACCGACTCTACCGGCGAGGACGGGGACTTCGCGGCCAAGGTGAAGAAGATCGAA CTCTTTGATGCGCTGCTGCCCGAGCTGCGTGCTCTGCAGCCCGACGTCCTGTGCATCGTGGGCGACCACTCCACGCCCAG CAAGCTTGCTAGCCACTCCTGGCACCCGGTTCCACTGCTGATCAACAGCCGCTATGGCCGCAAGGACCTCGCCCAGCGCT ACACCGAGGAGGAGGCGCAGAAGGGGAGCTTAGGCCTGCGCCGGGGCACGGACGTGATGCCGCTGCTGATGGCCAATGCG TTGAAGCTGCAAAAGTACGGGGCGTGA
Upstream 100 bases:
>100_bases TCCGGCAGCCTGACGGATGTTGTGCTGGTCGGGCGCGGGGCGGCTTTGCTCTCTATGTCACCTCTGCCACCCTGAGGACG GGAAGGGTACAGTAACGCCT
Downstream 100 bases:
>100_bases GCGGCTGAAGGTCAGCGTTCGGTTCGAACCGAAGACGGCTCAAGCGCCCTCAGCTGCGGCGCAGCGACGGGGCCGGGGCC ACCCCGTCTGAAGGCGTGTG
Product: cofactor-independent phosphoglycerate mutase
Products: NA
Alternate protein names: BPG-independent PGAM; Phosphoglyceromutase; aPGAM
Number of amino acids: Translated: 408; Mature: 408
Protein sequence:
>408_residues MDLIETVRPLAKKTDSKILMVVLDGVGGLPLTVNGETELATAKTPHLDALAAESQLGLVELVAAGITPGSGPGHLSLFGY DPLKYVVGRGALSAVGIGVKLNAGDVAVRGNFASLGESRLIIDRRAGRPSNEKNAEVVAKLRAAIPEIDGTPVEIYSESE HRFVVVFRATGTPLGADVSDVDPQVTGVPPRTAMAHDPASERTAHLVNAFVTRAEAALADESQVNGVLFRGYSDVPHFPN FDEIYQLRAACIASYPMYKGLASLVGMDVLPVEGEEDALAGKVAALKEHWHDYDFFYWHVKKTDSTGEDGDFAAKVKKIE LFDALLPELRALQPDVLCIVGDHSTPSKLASHSWHPVPLLINSRYGRKDLAQRYTEEEAQKGSLGLRRGTDVMPLLMANA LKLQKYGA
Sequences:
>Translated_408_residues MDLIETVRPLAKKTDSKILMVVLDGVGGLPLTVNGETELATAKTPHLDALAAESQLGLVELVAAGITPGSGPGHLSLFGY DPLKYVVGRGALSAVGIGVKLNAGDVAVRGNFASLGESRLIIDRRAGRPSNEKNAEVVAKLRAAIPEIDGTPVEIYSESE HRFVVVFRATGTPLGADVSDVDPQVTGVPPRTAMAHDPASERTAHLVNAFVTRAEAALADESQVNGVLFRGYSDVPHFPN FDEIYQLRAACIASYPMYKGLASLVGMDVLPVEGEEDALAGKVAALKEHWHDYDFFYWHVKKTDSTGEDGDFAAKVKKIE LFDALLPELRALQPDVLCIVGDHSTPSKLASHSWHPVPLLINSRYGRKDLAQRYTEEEAQKGSLGLRRGTDVMPLLMANA LKLQKYGA >Mature_408_residues MDLIETVRPLAKKTDSKILMVVLDGVGGLPLTVNGETELATAKTPHLDALAAESQLGLVELVAAGITPGSGPGHLSLFGY DPLKYVVGRGALSAVGIGVKLNAGDVAVRGNFASLGESRLIIDRRAGRPSNEKNAEVVAKLRAAIPEIDGTPVEIYSESE HRFVVVFRATGTPLGADVSDVDPQVTGVPPRTAMAHDPASERTAHLVNAFVTRAEAALADESQVNGVLFRGYSDVPHFPN FDEIYQLRAACIASYPMYKGLASLVGMDVLPVEGEEDALAGKVAALKEHWHDYDFFYWHVKKTDSTGEDGDFAAKVKKIE LFDALLPELRALQPDVLCIVGDHSTPSKLASHSWHPVPLLINSRYGRKDLAQRYTEEEAQKGSLGLRRGTDVMPLLMANA LKLQKYGA
Specific function: Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
COG id: COG3635
COG function: function code G; Predicted phosphoglycerate mutase, AP superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the BPG-independent phosphoglycerate mutase family. A-PGAM subfamily
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): APGM_DEIGD (Q1IW58)
Other databases:
- EMBL: CP000359 - RefSeq: YP_605695.1 - ProteinModelPortal: Q1IW58 - STRING: Q1IW58 - GeneID: 4056907 - GenomeReviews: CP000359_GR - KEGG: dge:Dgeo_2232 - NMPDR: fig|68909.1.peg.2737 - eggNOG: COG3635 - HOGENOM: HBG463247 - OMA: DIAFRCN - ProtClustDB: PRK04135 - BioCyc: DGEO319795:DGEO_2232-MONOMER - GO: GO:0006096 - HAMAP: MF_01402_B - InterPro: IPR017849 - InterPro: IPR017850 - InterPro: IPR004456 - InterPro: IPR006124 - Gene3D: G3DSA:3.40.720.10 - PIRSF: PIRSF006392
Pfam domain/function: PF01676 Metalloenzyme; PF10143 PhosphMutase; SSF53649 Alkaline_phosphatase_core
EC number: =5.4.2.1
Molecular weight: Translated: 43879; Mature: 43879
Theoretical pI: Translated: 5.77; Mature: 5.77
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDLIETVRPLAKKTDSKILMVVLDGVGGLPLTVNGETELATAKTPHLDALAAESQLGLVE CCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCEEECCCCCCHHHHHHCCCCHHH LVAAGITPGSGPGHLSLFGYDPLKYVVGRGALSAVGIGVKLNAGDVAVRGNFASLGESRL HHHHCCCCCCCCCEEEEECCCHHHHHHCCCCHHHEEEEEEECCCCEEEECCHHHCCCCEE IIDRRAGRPSNEKNAEVVAKLRAAIPEIDGTPVEIYSESEHRFVVVFRATGTPLGADVSD EEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCHH VDPQVTGVPPRTAMAHDPASERTAHLVNAFVTRAEAALADESQVNGVLFRGYSDVPHFPN CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC FDEIYQLRAACIASYPMYKGLASLVGMDVLPVEGEEDALAGKVAALKEHWHDYDFFYWHV HHHHHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE KKTDSTGEDGDFAAKVKKIELFDALLPELRALQPDVLCIVGDHSTPSKLASHSWHPVPLL EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCEEEE INSRYGRKDLAQRYTEEEAQKGSLGLRRGTDVMPLLMANALKLQKYGA EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDLIETVRPLAKKTDSKILMVVLDGVGGLPLTVNGETELATAKTPHLDALAAESQLGLVE CCHHHHHHHHHHCCCCCEEEEEECCCCCCEEEECCCCCEEECCCCCCHHHHHHCCCCHHH LVAAGITPGSGPGHLSLFGYDPLKYVVGRGALSAVGIGVKLNAGDVAVRGNFASLGESRL HHHHCCCCCCCCCEEEEECCCHHHHHHCCCCHHHEEEEEEECCCCEEEECCHHHCCCCEE IIDRRAGRPSNEKNAEVVAKLRAAIPEIDGTPVEIYSESEHRFVVVFRATGTPLGADVSD EEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEEEEECCCCCCCCCHH VDPQVTGVPPRTAMAHDPASERTAHLVNAFVTRAEAALADESQVNGVLFRGYSDVPHFPN CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCC FDEIYQLRAACIASYPMYKGLASLVGMDVLPVEGEEDALAGKVAALKEHWHDYDFFYWHV HHHHHHHHHHHHHHCHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEE KKTDSTGEDGDFAAKVKKIELFDALLPELRALQPDVLCIVGDHSTPSKLASHSWHPVPLL EECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCCEEEE INSRYGRKDLAQRYTEEEAQKGSLGLRRGTDVMPLLMANALKLQKYGA EECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA