Definition Deinococcus geothermalis DSM 11300, complete genome.
Accession NC_008025
Length 2,467,205

Click here to switch to the map view.

The map label for this gene is 94985255

Identifier: 94985255

GI number: 94985255

Start: 1225862

End: 1226194

Strand: Reverse

Name: 94985255

Synonym: Dgeo_1153

Alternate gene names: NA

Gene position: 1226194-1225862 (Counterclockwise)

Preceding gene: 94985256

Following gene: 94985254

Centisome position: 49.7

GC content: 63.66

Gene sequence:

>333_bases
ATGGCGACCCTGGAGATTGTCTGCCCCGTATGCGCGGAGGTGCTGGAACTCACCGACGCCGACCGTTCCGAGTTGCAGGT
GGGCGACGTGATCGTCTGCGATTCTTGCAACGCCGAGATGGAAGTGACCCGCAACGGCCCCGGCCAGGAATTCGACCTGG
TGCTGTTGGGCGTGCTGACCACCTGCCCAAGCTGCGGCGAGGAATTCGACGTCACCGATGAGATGCTGGAAGCGGCCCCC
ACCATTCAGAACGTGGACGGCACTGTCGCCAGCGTCGTGACCTGCCCCCACTGCCGCGCCCAAATCGAGCTGGAATTCGA
GGAGGTGGACTGA

Upstream 100 bases:

>100_bases
GCGCGAGGCGCTGCGCGAAGGGAGCATCCTGGCCTTTTTCAAGAAGTATGGCCGTTTTCCAGGCGAACCGCCCGCAGAGA
GCGGCCCGTAAACTGGGCGT

Downstream 100 bases:

>100_bases
AATCAGTCTAGACAATACTGCGTGTAACTTTTTCCGTCATTTAACCTATCAAGTGCTAGGAGGAGATATGCCTATTGTTC
AATTTGAAAACCCAGAGACG

Product: zinc finger, DHP-type

Products: NA

Alternate protein names: Zinc Finger DHP-Type

Number of amino acids: Translated: 110; Mature: 109

Protein sequence:

>110_residues
MATLEIVCPVCAEVLELTDADRSELQVGDVIVCDSCNAEMEVTRNGPGQEFDLVLLGVLTTCPSCGEEFDVTDEMLEAAP
TIQNVDGTVASVVTCPHCRAQIELEFEEVD

Sequences:

>Translated_110_residues
MATLEIVCPVCAEVLELTDADRSELQVGDVIVCDSCNAEMEVTRNGPGQEFDLVLLGVLTTCPSCGEEFDVTDEMLEAAP
TIQNVDGTVASVVTCPHCRAQIELEFEEVD
>Mature_109_residues
ATLEIVCPVCAEVLELTDADRSELQVGDVIVCDSCNAEMEVTRNGPGQEFDLVLLGVLTTCPSCGEEFDVTDEMLEAAPT
IQNVDGTVASVVTCPHCRAQIELEFEEVD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11837; Mature: 11706

Theoretical pI: Translated: 3.40; Mature: 3.40

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

7.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
10.0 %Cys+Met (Translated Protein)
7.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
9.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATLEIVCPVCAEVLELTDADRSELQVGDVIVCDSCNAEMEVTRNGPGQEFDLVLLGVLT
CCCHHHHHHHHHHHHHHCCCCCCCEEECCEEEECCCCCCEEEECCCCCCCHHHHHHHHHH
TCPSCGEEFDVTDEMLEAAPTIQNVDGTVASVVTCPHCRAQIELEFEEVD
CCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHEEECCCCCEEEEEEEEECC
>Mature Secondary Structure 
ATLEIVCPVCAEVLELTDADRSELQVGDVIVCDSCNAEMEVTRNGPGQEFDLVLLGVLT
CCHHHHHHHHHHHHHHCCCCCCCEEECCEEEECCCCCCEEEECCCCCCCHHHHHHHHHH
TCPSCGEEFDVTDEMLEAAPTIQNVDGTVASVVTCPHCRAQIELEFEEVD
CCCCCCCCCCCHHHHHHHCCCCCCCCCCHHHEEECCCCCEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA