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The map label for this gene is rlpA [C]

Identifier: 94985190

GI number: 94985190

Start: 1155829

End: 1156320

Strand: Reverse

Name: rlpA [C]

Synonym: Dgeo_1086

Alternate gene names: 94985190

Gene position: 1156320-1155829 (Counterclockwise)

Preceding gene: 94985191

Following gene: 94985189

Centisome position: 46.87

GC content: 71.95

Gene sequence:

>492_bases
GTGAGGGTGCGGCTGGCGCTTGCGGCGCTGCTGCTGGCCAGCTCGGCCGGGGCGGCGGGCACCTACCGGGTCAAGCCGGG
AGATTCGCTCTGGACCGTAGCCCGCGCGCATGGGACAACCGTGACCGCGCTGCGGCAGCTCAATCCCGGGGTGCGGACCC
ACGCCCTCCAGGTCGGTCAGCGGCTGCGGCTGCCGGGGCGGACGCAGGGGGTGCGTGGGGCGATCTACCAGCGCGGCTAT
GCGGTGTACTACGGCGGGCGGTTTAACCGCCACACCCGCATGACCGCCGCGCACCGGACGCTGCCGCTGGGCACGTGGGT
TCGGGTGACCCATACCCGGACCGGCCGCAGCGTGGACGTGCTGATCAATGACCGAGGGCCTTTTGGAAACGCCACGCGCG
TGATTGACCTGTCGCGGACGGCGGCCGCCCGGCTGGGCATTCTGTCGGCAGGCCAGGCTCCAGTGACGGTTCGGATCCTC
TCGCGGCCCTAG

Upstream 100 bases:

>100_bases
GGGCGTACCTGCCGGGGCTGGGTGGCGTGCGGATCGAGGATCTGGTGCTGGTGACCGAGAGCGGCCACGAGGTGCTGAGC
CGCGCGCCCAAGGAGCAGCT

Downstream 100 bases:

>100_bases
CCTTTCCCGGACAGGGTGTTACAATCGGCGCGGGTTTCACCCTAGAGGAGGAGTTTCAATGACGATGGAAACGGCGCTTC
TGACGCTGGATACGCTCGCC

Product: rare lipoprotein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MRVRLALAALLLASSAGAAGTYRVKPGDSLWTVARAHGTTVTALRQLNPGVRTHALQVGQRLRLPGRTQGVRGAIYQRGY
AVYYGGRFNRHTRMTAAHRTLPLGTWVRVTHTRTGRSVDVLINDRGPFGNATRVIDLSRTAAARLGILSAGQAPVTVRIL
SRP

Sequences:

>Translated_163_residues
MRVRLALAALLLASSAGAAGTYRVKPGDSLWTVARAHGTTVTALRQLNPGVRTHALQVGQRLRLPGRTQGVRGAIYQRGY
AVYYGGRFNRHTRMTAAHRTLPLGTWVRVTHTRTGRSVDVLINDRGPFGNATRVIDLSRTAAARLGILSAGQAPVTVRIL
SRP
>Mature_163_residues
MRVRLALAALLLASSAGAAGTYRVKPGDSLWTVARAHGTTVTALRQLNPGVRTHALQVGQRLRLPGRTQGVRGAIYQRGY
AVYYGGRFNRHTRMTAAHRTLPLGTWVRVTHTRTGRSVDVLINDRGPFGNATRVIDLSRTAAARLGILSAGQAPVTVRIL
SRP

Specific function: Unknown

COG id: COG0797

COG function: function code M; Lipoproteins

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rlpA family [H]

Homologues:

Organism=Escherichia coli, GI1786852, Length=74, Percent_Identity=48.6486486486487, Blast_Score=64, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014733
- InterPro:   IPR009009
- InterPro:   IPR012997 [H]

Pfam domain/function: PF03330 DPBB_1 [H]

EC number: NA

Molecular weight: Translated: 17629; Mature: 17629

Theoretical pI: Translated: 12.65; Mature: 12.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVRLALAALLLASSAGAAGTYRVKPGDSLWTVARAHGTTVTALRQLNPGVRTHALQVGQ
CCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCEEHHHHCCCCHHHHHHHHHH
RLRLPGRTQGVRGAIYQRGYAVYYGGRFNRHTRMTAAHRTLPLGTWVRVTHTRTGRSVDV
HCCCCCCCCCCCCHHHHCCEEEEECCEECCCEEEEECCCCCCCCCEEEEEECCCCCEEEE
LINDRGPFGNATRVIDLSRTAAARLGILSAGQAPVTVRILSRP
EEECCCCCCCCEEEEEECCHHHHHHCEEECCCCCEEEEEECCC
>Mature Secondary Structure
MRVRLALAALLLASSAGAAGTYRVKPGDSLWTVARAHGTTVTALRQLNPGVRTHALQVGQ
CCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEEECCCCCEEHHHHCCCCHHHHHHHHHH
RLRLPGRTQGVRGAIYQRGYAVYYGGRFNRHTRMTAAHRTLPLGTWVRVTHTRTGRSVDV
HCCCCCCCCCCCCHHHHCCEEEEECCEECCCEEEEECCCCCCCCCEEEEEECCCCCEEEE
LINDRGPFGNATRVIDLSRTAAARLGILSAGQAPVTVRILSRP
EEECCCCCCCCEEEEEECCHHHHHHCEEECCCCCEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]