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The map label for this gene is cspA [H]

Identifier: 94985111

GI number: 94985111

Start: 1079568

End: 1079837

Strand: Reverse

Name: cspA [H]

Synonym: Dgeo_1006

Alternate gene names: 94985111

Gene position: 1079837-1079568 (Counterclockwise)

Preceding gene: 94985115

Following gene: 94985104

Centisome position: 43.77

GC content: 61.48

Gene sequence:

>270_bases
ATGGCTCAAGGTCGGGTAAAGTGGTTTAACGTCGAAAAGGGCTACGGGTTCATTGAGCACCCCGGCAACCCTGACGTGTT
TGTGCACTACAGCGCCATCCAGAGCAGCGGCTTCCGCAAGCTGAATGAGGGCGACGAGGTCGAATTTGAGGTTGAGCCTG
GCCAGGGCAACAAAGGCCCACAGGCCAAGAACGTGGTGGTCACGAACGCCGCACCGGCACCCATGGGAGGCAACATGGGC
GGCGGGAGCCGTGGCGGCAGCCGCTGGTAA

Upstream 100 bases:

>100_bases
CGGGCATGCGATACTACACGCGTCTCAAGTCCACCCCTGAAGAGGTACCGGCTCAGAGGGCTGGTTGCCGGGTGCTGGAT
GGCGGGATGCAAGGAGAGTT

Downstream 100 bases:

>100_bases
GCTGGAAAAGCTAAAGTTTCAGGGGTGAGCGGCCTGCCGTGCGGCTCGCCCCTTTTTCGGTCGCCCAAGGAAGCGCCAAC
AGCAGAGGTCAGCGCGGTAG

Product: cold-shock DNA-binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 89; Mature: 88

Protein sequence:

>89_residues
MAQGRVKWFNVEKGYGFIEHPGNPDVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQGNKGPQAKNVVVTNAAPAPMGGNMG
GGSRGGSRW

Sequences:

>Translated_89_residues
MAQGRVKWFNVEKGYGFIEHPGNPDVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQGNKGPQAKNVVVTNAAPAPMGGNMG
GGSRGGSRW
>Mature_88_residues
AQGRVKWFNVEKGYGFIEHPGNPDVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQGNKGPQAKNVVVTNAAPAPMGGNMGG
GSRGGSRW

Specific function: Can bind to ATTGG and CCAAT motifs (Y-box motifs) of single stranded oligonucleotides [H]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=58.4615384615385, Blast_Score=76, Evalue=5e-16,
Organism=Escherichia coli, GI1787839, Length=67, Percent_Identity=53.7313432835821, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1786841, Length=65, Percent_Identity=56.9230769230769, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1788126, Length=65, Percent_Identity=58.4615384615385, Blast_Score=72, Evalue=5e-15,
Organism=Escherichia coli, GI1789979, Length=64, Percent_Identity=54.6875, Blast_Score=70, Evalue=2e-14,
Organism=Escherichia coli, GI1787834, Length=64, Percent_Identity=59.375, Blast_Score=68, Evalue=1e-13,
Organism=Escherichia coli, GI1787107, Length=67, Percent_Identity=49.2537313432836, Blast_Score=59, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 9522; Mature: 9390

Theoretical pI: Translated: 7.69; Mature: 7.69

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQGRVKWFNVEKGYGFIEHPGNPDVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQGNKGP
CCCCCEEEEEECCCCEEEECCCCCCEEEEEECCCCCCCEECCCCCCEEEEEECCCCCCCC
QAKNVVVTNAAPAPMGGNMGGGSRGGSRW
CCCEEEEECCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AQGRVKWFNVEKGYGFIEHPGNPDVFVHYSAIQSSGFRKLNEGDEVEFEVEPGQGNKGP
CCCCEEEEEECCCCEEEECCCCCCEEEEEECCCCCCCEECCCCCCEEEEEECCCCCCCC
QAKNVVVTNAAPAPMGGNMGGGSRGGSRW
CCCEEEEECCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12721629 [H]