| Definition | Deinococcus geothermalis DSM 11300, complete genome. |
|---|---|
| Accession | NC_008025 |
| Length | 2,467,205 |
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The map label for this gene is 94985104
Identifier: 94985104
GI number: 94985104
Start: 1072506
End: 1073723
Strand: Reverse
Name: 94985104
Synonym: Dgeo_0999
Alternate gene names: NA
Gene position: 1073723-1072506 (Counterclockwise)
Preceding gene: 94985111
Following gene: 94985102
Centisome position: 43.52
GC content: 60.26
Gene sequence:
>1218_bases ATGAGTAAGGTCATGATTATTGGCGCGGGTGGCGTGGGCAACGTCGTGGCAAAGAAGTGCGCGCAAAACGACAGCGTGTT CACCGAGGTGCTGCTTGCCAGCCGCACCGTCAGCAAGTGCGACAAGATCGTCGCGGAGATTCGGGAACACTTCCCCCAGA GCAAGACGCAGTTCACAACGGCGGCGGTGGACGCCGACAACGTCCCAGAGCTGGTGGCTCTCATCCGTTCCTTCGGGCCG GAACTGGTGATCAACGTGGCTCTCCCCTATCAGGATCTCACGATCATGGACGCCTGCCTGGAAACGGGCGTGCATTACCT CGACACCGCGAACTACGAACCGCGAGACGTGGCCAAGTTTGAGTATTCCTGGCAGTGGGCCTACCGTGAGCGCTTTGAGA AAGCCGGGCTGATGGCGCTCCTGGGCTGCGGCTTCGACCCCGGCGCGACCAACGTGTTTACCGCCCACCACGCCAAACAT CACTTTTCAGAAATCCATTACCTCGACATCGTCGACTGCAACAACGGCAGTCACGGCAAGGCCTTTGCCACCAACTTCAA CCCAGAAATTAACCTCCGCGAGATCACCGCAAATGGGCGCTACTGGGAAAACGGGCAGTGGGTCGAGACGGCGCCGCTGG AGATCAGCCAGGATATCTACTACCCCAATGTCGCCACCCGCAAGAGCTTCGTGCTGTACCACGAGGAACTCGAGTCGCTG GTGATCAACTTTCCCACCATCCGGCGCGCCCGCTTTTGGATGACCTTTGGCGAGCAGTATCTCAAGTACCTCAGCGTGCT GGAATCGGTCGGCATGACCTCCATCGAGCCGATCAACTTCCGAGGGATGGAGATCGCGCCCATCGAGTTTCTCAAGGCCG TGCTGCCTGCTCCCGAATCGCTGGCCGCCGACTACACCGGCAAGACCTGCATCGGCGTGCAGGCGCGCGGCATCGGCAAG GACGGCAAGGAGAAGGTGCATTTCGTCTATAACATCTGTGATCACGCAGAAGCGTACCGCGAGGTGCAGGCGCAGGCGAT CAGCTACACGACCGGCGTGCCCGCCATGATCGGCGCGATGCTGATGCTGCAGGGCGTGTGGATGAAACCCGGCGTGTACA ACGTCGAGGAATTCGACCCCGATCCCTTCATCGCCGCGATGAACACCTGGGGTCTGCCGGTCGACGAGTTGACGGGCATT CAGCTCGTGCTGGACTGA
Upstream 100 bases:
>100_bases CAGTGTTGCCTCCCACCACGCCCCACCACGCCCAGGCCGCGCCCTGGAGAAGGGGGAGGGAGGAGGGCAGGGCGCGAGAA GCAGGGTACACTGGCCCCCG
Downstream 100 bases:
>100_bases GCGCGGCTGACTCAGGCCCCGGAAGCGTTCCCGGCTCCGGGGTCTTTTCTTGGCCGAGTTCTTGCCGAGTTCTTGGCTGA GGGCAGAGCTTCCTTACGCC
Product: saccharopine dehydrogenase
Products: NA
Alternate protein names: Carboxynorspermidine Dehydrogenase; Saccharopine Dehydrogenase-Like Protein; Carboxynorspermide Hydratase; Saccharopine Dehydrogenase Family Protein; Acyl Carrier Protein
Number of amino acids: Translated: 405; Mature: 404
Protein sequence:
>405_residues MSKVMIIGAGGVGNVVAKKCAQNDSVFTEVLLASRTVSKCDKIVAEIREHFPQSKTQFTTAAVDADNVPELVALIRSFGP ELVINVALPYQDLTIMDACLETGVHYLDTANYEPRDVAKFEYSWQWAYRERFEKAGLMALLGCGFDPGATNVFTAHHAKH HFSEIHYLDIVDCNNGSHGKAFATNFNPEINLREITANGRYWENGQWVETAPLEISQDIYYPNVATRKSFVLYHEELESL VINFPTIRRARFWMTFGEQYLKYLSVLESVGMTSIEPINFRGMEIAPIEFLKAVLPAPESLAADYTGKTCIGVQARGIGK DGKEKVHFVYNICDHAEAYREVQAQAISYTTGVPAMIGAMLMLQGVWMKPGVYNVEEFDPDPFIAAMNTWGLPVDELTGI QLVLD
Sequences:
>Translated_405_residues MSKVMIIGAGGVGNVVAKKCAQNDSVFTEVLLASRTVSKCDKIVAEIREHFPQSKTQFTTAAVDADNVPELVALIRSFGP ELVINVALPYQDLTIMDACLETGVHYLDTANYEPRDVAKFEYSWQWAYRERFEKAGLMALLGCGFDPGATNVFTAHHAKH HFSEIHYLDIVDCNNGSHGKAFATNFNPEINLREITANGRYWENGQWVETAPLEISQDIYYPNVATRKSFVLYHEELESL VINFPTIRRARFWMTFGEQYLKYLSVLESVGMTSIEPINFRGMEIAPIEFLKAVLPAPESLAADYTGKTCIGVQARGIGK DGKEKVHFVYNICDHAEAYREVQAQAISYTTGVPAMIGAMLMLQGVWMKPGVYNVEEFDPDPFIAAMNTWGLPVDELTGI QLVLD >Mature_404_residues SKVMIIGAGGVGNVVAKKCAQNDSVFTEVLLASRTVSKCDKIVAEIREHFPQSKTQFTTAAVDADNVPELVALIRSFGPE LVINVALPYQDLTIMDACLETGVHYLDTANYEPRDVAKFEYSWQWAYRERFEKAGLMALLGCGFDPGATNVFTAHHAKHH FSEIHYLDIVDCNNGSHGKAFATNFNPEINLREITANGRYWENGQWVETAPLEISQDIYYPNVATRKSFVLYHEELESLV INFPTIRRARFWMTFGEQYLKYLSVLESVGMTSIEPINFRGMEIAPIEFLKAVLPAPESLAADYTGKTCIGVQARGIGKD GKEKVHFVYNICDHAEAYREVQAQAISYTTGVPAMIGAMLMLQGVWMKPGVYNVEEFDPDPFIAAMNTWGLPVDELTGIQ LVLD
Specific function: Unknown
COG id: COG1748
COG function: function code E; Saccharopine dehydrogenase and related proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45245; Mature: 45114
Theoretical pI: Translated: 4.88; Mature: 4.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKVMIIGAGGVGNVVAKKCAQNDSVFTEVLLASRTVSKCDKIVAEIREHFPQSKTQFTT CCEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE AAVDADNVPELVALIRSFGPELVINVALPYQDLTIMDACLETGVHYLDTANYEPRDVAKF EECCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEE EYSWQWAYRERFEKAGLMALLGCGFDPGATNVFTAHHAKHHFSEIHYLDIVDCNNGSHGK EEEEEHHHHHHHHHCCCCEEEECCCCCCCCCEEEHHHHHHHHCCEEEEEEEECCCCCCCC AFATNFNPEINLREITANGRYWENGQWVETAPLEISQDIYYPNVATRKSFVLYHEELESL EEEECCCCCEEEEEEECCCEEECCCCEEEECCCEECCCCCCCCCCCCCHHEEEHHHHHHH VINFPTIRRARFWMTFGEQYLKYLSVLESVGMTSIEPINFRGMEIAPIEFLKAVLPAPES HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHCCCCHH LAADYTGKTCIGVQARGIGKDGKEKVHFVYNICDHAEAYREVQAQAISYTTGVPAMIGAM HHCCCCCCEEEEEEECCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LMLQGVWMKPGVYNVEEFDPDPFIAAMNTWGLPVDELTGIQLVLD HHHCCCCCCCCCCCHHHCCCCCEEEECCCCCCCHHHCCCEEEEEC >Mature Secondary Structure SKVMIIGAGGVGNVVAKKCAQNDSVFTEVLLASRTVSKCDKIVAEIREHFPQSKTQFTT CEEEEEECCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE AAVDADNVPELVALIRSFGPELVINVALPYQDLTIMDACLETGVHYLDTANYEPRDVAKF EECCCCCHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEE EYSWQWAYRERFEKAGLMALLGCGFDPGATNVFTAHHAKHHFSEIHYLDIVDCNNGSHGK EEEEEHHHHHHHHHCCCCEEEECCCCCCCCCEEEHHHHHHHHCCEEEEEEEECCCCCCCC AFATNFNPEINLREITANGRYWENGQWVETAPLEISQDIYYPNVATRKSFVLYHEELESL EEEECCCCCEEEEEEECCCEEECCCCEEEECCCEECCCCCCCCCCCCCHHEEEHHHHHHH VINFPTIRRARFWMTFGEQYLKYLSVLESVGMTSIEPINFRGMEIAPIEFLKAVLPAPES HHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECHHHHHHHHCCCCHH LAADYTGKTCIGVQARGIGKDGKEKVHFVYNICDHAEAYREVQAQAISYTTGVPAMIGAM HHCCCCCCEEEEEEECCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH LMLQGVWMKPGVYNVEEFDPDPFIAAMNTWGLPVDELTGIQLVLD HHHCCCCCCCCCCCHHHCCCCCEEEECCCCCCCHHHCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA