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The map label for this gene is ygdD [C]

Identifier: 94984871

GI number: 94984871

Start: 827921

End: 828274

Strand: Reverse

Name: ygdD [C]

Synonym: Dgeo_0764

Alternate gene names: 94984871

Gene position: 828274-827921 (Counterclockwise)

Preceding gene: 94984878

Following gene: 94984868

Centisome position: 33.57

GC content: 67.51

Gene sequence:

>354_bases
ATGCAGAACCTCAATTCCACAGTGGCCGGAGGCGTCCTCGCCGCACTGGCTGTGGCTTTTGGCGCATTTGGTGCCCACGC
CCTCAAGTCTCGGCTGGACCCCGGCCTGCTGGCTGACTTCGAGACGGCAGTTCGTTATCAGATGTACGCGGCGCTTGCCC
TGCTCGTTCTGGGCGCGCAGCCCGCACAGCGCCGCGCACCGCTGCTGCTGCTTGCCGGAGCGGTTCTCTTCAGCGGCTCG
CTGTATGTGCTGGCCCTGAGTGGGGTGCGCTGGCTGGGTGCCGTCACGCCGCTCGGCGGGCTGCTCCTGATCGCGGGCTT
CGCCGTCGCAGCGCTGGACGCGAGGAAGTTGTAG

Upstream 100 bases:

>100_bases
TCTCAGTTTCCCCCCGAGTTCATCCCGGTTTCCCACTACTCTCCCACCGGATGTTCGGCCATGGGACAATCCCCCACCTG
TAGCCTCGTAGCCTCTGCCT

Downstream 100 bases:

>100_bases
GGGGGGTTTTTCCACACACCACCACACAACCACACACAATCACACGCCGCCCCACTGTTTGGAGGCGGCGCTGTGCTGGT
GCGGGGGGGCGATAAGCCGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MQNLNSTVAGGVLAALAVAFGAFGAHALKSRLDPGLLADFETAVRYQMYAALALLVLGAQPAQRRAPLLLLAGAVLFSGS
LYVLALSGVRWLGAVTPLGGLLLIAGFAVAALDARKL

Sequences:

>Translated_117_residues
MQNLNSTVAGGVLAALAVAFGAFGAHALKSRLDPGLLADFETAVRYQMYAALALLVLGAQPAQRRAPLLLLAGAVLFSGS
LYVLALSGVRWLGAVTPLGGLLLIAGFAVAALDARKL
>Mature_117_residues
MQNLNSTVAGGVLAALAVAFGAFGAHALKSRLDPGLLADFETAVRYQMYAALALLVLGAQPAQRRAPLLLLAGAVLFSGS
LYVLALSGVRWLGAVTPLGGLLLIAGFAVAALDARKL

Specific function: Unknown

COG id: COG2363

COG function: function code S; Uncharacterized small membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0382 family [H]

Homologues:

Organism=Escherichia coli, GI1789172, Length=107, Percent_Identity=42.0560747663551, Blast_Score=64, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006696 [H]

Pfam domain/function: PF04241 DUF423 [H]

EC number: NA

Molecular weight: Translated: 11930; Mature: 11930

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLNSTVAGGVLAALAVAFGAFGAHALKSRLDPGLLADFETAVRYQMYAALALLVLGAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PAQRRAPLLLLAGAVLFSGSLYVLALSGVRWLGAVTPLGGLLLIAGFAVAALDARKL
CCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQNLNSTVAGGVLAALAVAFGAFGAHALKSRLDPGLLADFETAVRYQMYAALALLVLGAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PAQRRAPLLLLAGAVLFSGSLYVLALSGVRWLGAVTPLGGLLLIAGFAVAALDARKL
CCHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA