Click here to switch to the map view.

The map label for this gene is araQ [H]

Identifier: 94984856

GI number: 94984856

Start: 810808

End: 812352

Strand: Reverse

Name: araQ [H]

Synonym: Dgeo_0749

Alternate gene names: 94984856

Gene position: 812352-810808 (Counterclockwise)

Preceding gene: 94984857

Following gene: 94984855

Centisome position: 32.93

GC content: 66.8

Gene sequence:

>1545_bases
ATGACCGCCCTTCCGGGTCAGCCCACTCCGCAGCGGCGGAGCCTGCAAGACCAGGACCGCTGGCTGGCGCGCCGCCGCTG
GGCACGCGCTGGGTGGCTCTACGCCTTCATGCTGGTGATGAGCTTCTTCTTCCTGGGGCCGTTCCTGATGGGTCTGCTGA
GCAGCCTCAAGGACGATCCCAACGAGTACCCGCCTCGGCTGGTCATCCCGCAGCTCAGCGCCCGGTACATCGGCAACGCT
TACCGGCTGGGCGTGGCGGGCAGCGGCAACGGCTGGCAGGGGGGCCTGGCACCGGGGCACCAGGTCGCCTTTGAGGTGAG
CGTGGTGTCGCCGCCCGGCGCGCCCCAGGCCCCGCCCAGCGTGGCGCTCTTTCCGTACCAGCCGGTCAGCCTGGTGACCA
TCGGCCAGCAGGCACAGGCCAAGGACTACGCGCAGCTCCAGACCAAGCTGATCGGTCAGCAAGGAGACCGGCGCACCTAC
CGCGTGACCGTGAGCTATCCGCCTCTCACCGCGCAGCCAGGGGACGTGCTGGAGGCAAAGGTGGCTCCCGCCGACAACGC
GGGGAATCTGCGGGCGGTGCTGCCAGGCGGACAGACCGTGCCGGTGACGCTGGACACACCACAGGCCCAGGCGCACCAGT
ACGACTTCAGCGAGGGGCAGCCGGTCGAGCTGGTCCGGGCGGGAGGACAGTACTTTCTGCGCGGGCCGCTCTTCCAGCGC
ACGCCGCTGGAGGTCAACGTGCAGCGCGGGCAGAGCATCGTGGGGAGCACCCTGCCGCCCAGCGACCGGCAGAACTTTGG
CCGCAGCTTCGCCTACCGCAACATCACGCCCGGCATCCTGGGCTACACCTTCAACAACTACCGGCGCGCCTTTGACGAGA
CGACCGACCCGCGCACCGGCCGCAGCCTGTTTTTCACCTGGACGCTGAACTCGTTCCTCTATGCCTTCCTGCGGGTGGTG
ACGGCAGTCGCCCTCTGCTCGCTGGCGGGATACGCGCTGGCCCGGCTCAACTTTCCCGGCAAGACGCTGATCTTCGTGGC
GGCTGTGCTGTTTGTGCAGATGGTGCCCGCACAGGTGAACCTGGTCAGCAACTACGTGCTGCTCAAGAATCTGGGATTGC
TGAACCTATGGGGTCTGTGGCTGAGTCAGAGCGCAACGGCAGCGGGCGTATTCCTGATGAAACAGTTCTTCGAGGGGATG
CCGCGCGAACTGGAGGAATCGGCAGCCATCGACGGCGCGGGCCCCTTCACCACCTTCTGGCGGGTGATGCTGCCCCAGGC
GGGTCCGGCACTGATCGCCCTCATCATCACCCAATTCCAGGGTGCCTGGAACGACTTCTTCTGGCCGCTGGTGCTGCTGC
GCGCCAACACCGACTTCACGCTGACGGTGGGCCTCTCGAACTTCCGCAGTCTGTACGGCGGCCAGGGTGACTACGGCCTG
ATCCTGGCCGGGGCGGTCCTCAGCGCCATCCCAGTCATCATCGTCTTTGTGGTGTTCCAGCGCTACTTCCTCGATACCGG
GACCGAGAGCGCGGTGAAGGGGTGA

Upstream 100 bases:

>100_bases
CGGTCAACATGGCCTGCGCCGCCGCGATCATCCTCGCGTTGATCATCTTGGCGATGGTCTTTCTCCAGCGCCGCTTTTTC
GTGGCTCCGGAGGCGAACTC

Downstream 100 bases:

>100_bases
ACTGCCCCACCGGCGGACCGTTCCAACTCTTGTTCTGTCTCAGGAGCATCCATGCTCAGTACCCGCACTGTTCTGAAAGA
CAATGATCTGTACCTGGTGG

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 514; Mature: 513

Protein sequence:

>514_residues
MTALPGQPTPQRRSLQDQDRWLARRRWARAGWLYAFMLVMSFFFLGPFLMGLLSSLKDDPNEYPPRLVIPQLSARYIGNA
YRLGVAGSGNGWQGGLAPGHQVAFEVSVVSPPGAPQAPPSVALFPYQPVSLVTIGQQAQAKDYAQLQTKLIGQQGDRRTY
RVTVSYPPLTAQPGDVLEAKVAPADNAGNLRAVLPGGQTVPVTLDTPQAQAHQYDFSEGQPVELVRAGGQYFLRGPLFQR
TPLEVNVQRGQSIVGSTLPPSDRQNFGRSFAYRNITPGILGYTFNNYRRAFDETTDPRTGRSLFFTWTLNSFLYAFLRVV
TAVALCSLAGYALARLNFPGKTLIFVAAVLFVQMVPAQVNLVSNYVLLKNLGLLNLWGLWLSQSATAAGVFLMKQFFEGM
PRELEESAAIDGAGPFTTFWRVMLPQAGPALIALIITQFQGAWNDFFWPLVLLRANTDFTLTVGLSNFRSLYGGQGDYGL
ILAGAVLSAIPVIIVFVVFQRYFLDTGTESAVKG

Sequences:

>Translated_514_residues
MTALPGQPTPQRRSLQDQDRWLARRRWARAGWLYAFMLVMSFFFLGPFLMGLLSSLKDDPNEYPPRLVIPQLSARYIGNA
YRLGVAGSGNGWQGGLAPGHQVAFEVSVVSPPGAPQAPPSVALFPYQPVSLVTIGQQAQAKDYAQLQTKLIGQQGDRRTY
RVTVSYPPLTAQPGDVLEAKVAPADNAGNLRAVLPGGQTVPVTLDTPQAQAHQYDFSEGQPVELVRAGGQYFLRGPLFQR
TPLEVNVQRGQSIVGSTLPPSDRQNFGRSFAYRNITPGILGYTFNNYRRAFDETTDPRTGRSLFFTWTLNSFLYAFLRVV
TAVALCSLAGYALARLNFPGKTLIFVAAVLFVQMVPAQVNLVSNYVLLKNLGLLNLWGLWLSQSATAAGVFLMKQFFEGM
PRELEESAAIDGAGPFTTFWRVMLPQAGPALIALIITQFQGAWNDFFWPLVLLRANTDFTLTVGLSNFRSLYGGQGDYGL
ILAGAVLSAIPVIIVFVVFQRYFLDTGTESAVKG
>Mature_513_residues
TALPGQPTPQRRSLQDQDRWLARRRWARAGWLYAFMLVMSFFFLGPFLMGLLSSLKDDPNEYPPRLVIPQLSARYIGNAY
RLGVAGSGNGWQGGLAPGHQVAFEVSVVSPPGAPQAPPSVALFPYQPVSLVTIGQQAQAKDYAQLQTKLIGQQGDRRTYR
VTVSYPPLTAQPGDVLEAKVAPADNAGNLRAVLPGGQTVPVTLDTPQAQAHQYDFSEGQPVELVRAGGQYFLRGPLFQRT
PLEVNVQRGQSIVGSTLPPSDRQNFGRSFAYRNITPGILGYTFNNYRRAFDETTDPRTGRSLFFTWTLNSFLYAFLRVVT
AVALCSLAGYALARLNFPGKTLIFVAAVLFVQMVPAQVNLVSNYVLLKNLGLLNLWGLWLSQSATAAGVFLMKQFFEGMP
RELEESAAIDGAGPFTTFWRVMLPQAGPALIALIITQFQGAWNDFFWPLVLLRANTDFTLTVGLSNFRSLYGGQGDYGLI
LAGAVLSAIPVIIVFVVFQRYFLDTGTESAVKG

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1790464, Length=249, Percent_Identity=32.1285140562249, Blast_Score=101, Evalue=1e-22,
Organism=Escherichia coli, GI1789860, Length=208, Percent_Identity=30.2884615384615, Blast_Score=96, Evalue=4e-21,
Organism=Escherichia coli, GI1787571, Length=193, Percent_Identity=31.0880829015544, Blast_Score=87, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 56379; Mature: 56247

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTALPGQPTPQRRSLQDQDRWLARRRWARAGWLYAFMLVMSFFFLGPFLMGLLSSLKDDP
CCCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NEYPPRLVIPQLSARYIGNAYRLGVAGSGNGWQGGLAPGHQVAFEVSVVSPPGAPQAPPS
CCCCCEEECCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
VALFPYQPVSLVTIGQQAQAKDYAQLQTKLIGQQGDRRTYRVTVSYPPLTAQPGDVLEAK
EEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEE
VAPADNAGNLRAVLPGGQTVPVTLDTPQAQAHQYDFSEGQPVELVRAGGQYFLRGPLFQR
ECCCCCCCCEEEECCCCCEEEEEECCCCHHHHCCCCCCCCCHHHHHCCCCEEEECCCCCC
TPLEVNVQRGQSIVGSTLPPSDRQNFGRSFAYRNITPGILGYTFNNYRRAFDETTDPRTG
CCCEEECCCCCHHHCCCCCCCHHHHHCHHHHCCCCCCCHHCCCHHHHHHHHCCCCCCCCC
RSLFFTWTLNSFLYAFLRVVTAVALCSLAGYALARLNFPGKTLIFVAAVLFVQMVPAQVN
CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCHHHH
LVSNYVLLKNLGLLNLWGLWLSQSATAAGVFLMKQFFEGMPRELEESAAIDGAGPFTTFW
HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHH
RVMLPQAGPALIALIITQFQGAWNDFFWPLVLLRANTDFTLTVGLSNFRSLYGGQGDYGL
HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHEEEEECCCEEEEECHHHHHHHHCCCCCHHH
ILAGAVLSAIPVIIVFVVFQRYFLDTGTESAVKG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC
>Mature Secondary Structure 
TALPGQPTPQRRSLQDQDRWLARRRWARAGWLYAFMLVMSFFFLGPFLMGLLSSLKDDP
CCCCCCCCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NEYPPRLVIPQLSARYIGNAYRLGVAGSGNGWQGGLAPGHQVAFEVSVVSPPGAPQAPPS
CCCCCEEECCCHHHHHCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEEECCCCCCCCCCC
VALFPYQPVSLVTIGQQAQAKDYAQLQTKLIGQQGDRRTYRVTVSYPPLTAQPGDVLEAK
EEECCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCCCCEEE
VAPADNAGNLRAVLPGGQTVPVTLDTPQAQAHQYDFSEGQPVELVRAGGQYFLRGPLFQR
ECCCCCCCCEEEECCCCCEEEEEECCCCHHHHCCCCCCCCCHHHHHCCCCEEEECCCCCC
TPLEVNVQRGQSIVGSTLPPSDRQNFGRSFAYRNITPGILGYTFNNYRRAFDETTDPRTG
CCCEEECCCCCHHHCCCCCCCHHHHHCHHHHCCCCCCCHHCCCHHHHHHHHCCCCCCCCC
RSLFFTWTLNSFLYAFLRVVTAVALCSLAGYALARLNFPGKTLIFVAAVLFVQMVPAQVN
CEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCHHHH
LVSNYVLLKNLGLLNLWGLWLSQSATAAGVFLMKQFFEGMPRELEESAAIDGAGPFTTFW
HHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHH
RVMLPQAGPALIALIITQFQGAWNDFFWPLVLLRANTDFTLTVGLSNFRSLYGGQGDYGL
HHHCCCCCHHHHHHHHHHHCCCHHHHHHHHEEEEECCCEEEEECHHHHHHHHCCCCCHHH
ILAGAVLSAIPVIIVFVVFQRYFLDTGTESAVKG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]