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The map label for this gene is jag [H]

Identifier: 94984177

GI number: 94984177

Start: 66937

End: 67527

Strand: Reverse

Name: jag [H]

Synonym: Dgeo_0069

Alternate gene names: 94984177

Gene position: 67527-66937 (Counterclockwise)

Preceding gene: 94984178

Following gene: 94984176

Centisome position: 2.74

GC content: 71.24

Gene sequence:

>591_bases
ATGGACAACCGCACGAACCTCGACGATTACCTCGCGGGGCTGGGCATCAGTGACGCGGACGAGACCGCCCTGCCGCCCCC
CTCGCCCGAGGTGATGGCGCCCGCCCCGTCTGCGCTGGAGGCCGCACACGAGGATCCTCGCGCGGTGCTGGAACGCTTTC
TCCGGGGCCTGACCTCACGCATCGACTCTACGCTCACGGTCACAGTCCGGGAGGGCGAGGACGCGCTGGAGGCAGAGATC
GGCGGGGAGAACGCCGGGCGCCTCGCCGGACGCGATGGGCGCACGCTGGCGGCGATCGAGGTGCTGGCGTACACGGTGCT
GGCGAAGCAGGCAGGCCGCAATGACCTGCGCGTGCGGGTGGACGTGGGCGGCTACCGCAAGCGGCAGGCCGAGACGCTCA
CCCGCCTGGCCGAGCGTCTGGCGGTGCAGGTCGCCAAGAGCGGCGAGGCCCACGAACTCCAGCCCATGCCCGCCGCCGAC
CGCCGCGTTATCCACATCGCCCTCAAAGAACACCCCGACGTGACCACCGAGTCGGTCGGGGAGGGGGCGGCGCGGCGGCT
GATCATCAAGCCAAGGCCCCATCAGCCATGA

Upstream 100 bases:

>100_bases
AACGGCAGGCTGAGGGCGGGCGGGCCGCGGCGGCGAGCGGAAGCGGCGCTTTCTGCCCTCTGTGGGCGTGCGGTGAGAGG
GGCCGCGCTACACTCGTCCC

Downstream 100 bases:

>100_bases
GCGAGCGGGCCGGCCCCACCGCCAGAGCGTTGCGCCTGTGACTGCCACCCTCACCCTCCACACCTGGTTGCAGGAGGCTA
CGCGCCTGCTGCGTGACGCG

Product: single-stranded nucleic acid binding R3H

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 196

Protein sequence:

>196_residues
MDNRTNLDDYLAGLGISDADETALPPPSPEVMAPAPSALEAAHEDPRAVLERFLRGLTSRIDSTLTVTVREGEDALEAEI
GGENAGRLAGRDGRTLAAIEVLAYTVLAKQAGRNDLRVRVDVGGYRKRQAETLTRLAERLAVQVAKSGEAHELQPMPAAD
RRVIHIALKEHPDVTTESVGEGAARRLIIKPRPHQP

Sequences:

>Translated_196_residues
MDNRTNLDDYLAGLGISDADETALPPPSPEVMAPAPSALEAAHEDPRAVLERFLRGLTSRIDSTLTVTVREGEDALEAEI
GGENAGRLAGRDGRTLAAIEVLAYTVLAKQAGRNDLRVRVDVGGYRKRQAETLTRLAERLAVQVAKSGEAHELQPMPAAD
RRVIHIALKEHPDVTTESVGEGAARRLIIKPRPHQP
>Mature_196_residues
MDNRTNLDDYLAGLGISDADETALPPPSPEVMAPAPSALEAAHEDPRAVLERFLRGLTSRIDSTLTVTVREGEDALEAEI
GGENAGRLAGRDGRTLAAIEVLAYTVLAKQAGRNDLRVRVDVGGYRKRQAETLTRLAERLAVQVAKSGEAHELQPMPAAD
RRVIHIALKEHPDVTTESVGEGAARRLIIKPRPHQP

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 21173; Mature: 21173

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDNRTNLDDYLAGLGISDADETALPPPSPEVMAPAPSALEAAHEDPRAVLERFLRGLTSR
CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHH
IDSTLTVTVREGEDALEAEIGGENAGRLAGRDGRTLAAIEVLAYTVLAKQAGRNDLRVRV
CCCEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
DVGGYRKRQAETLTRLAERLAVQVAKSGEAHELQPMPAADRRVIHIALKEHPDVTTESVG
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHC
EGAARRLIIKPRPHQP
CHHHCEEEECCCCCCC
>Mature Secondary Structure
MDNRTNLDDYLAGLGISDADETALPPPSPEVMAPAPSALEAAHEDPRAVLERFLRGLTSR
CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCHHHHHHHHHHHHHHH
IDSTLTVTVREGEDALEAEIGGENAGRLAGRDGRTLAAIEVLAYTVLAKQAGRNDLRVRV
CCCEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
DVGGYRKRQAETLTRLAERLAVQVAKSGEAHELQPMPAADRRVIHIALKEHPDVTTESVG
ECCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHC
EGAARRLIIKPRPHQP
CHHHCEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]