BacMap

Definition	Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence.
Accession	NC_008010
Length	574,127

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The map label for this gene is ybbL [H]

Identifier: 94972008

GI number: 94972008

Start: 507804

End: 508382

Strand: Direct

Name: ybbL [H]

Synonym: Dgeo_2540

Alternate gene names: 94972008

Gene position: 507804-508382 (Clockwise)

Preceding gene: 94972009

Following gene: 94972007

Centisome position: 88.45

GC content: 69.78

Gene sequence:

>579_bases
GTGACGGCTGGCGAGAGCGTCGCGGTGGTTGGGCCTTCAGGGTCGGGCAAGAGCGTTCTGCTGCGAACGCTGGCGGGGCT
GGAGGTGGTGGAGGCGGGCGAGGTGCGGTTTCAGGGAAAGCCGCAGGGCGCGTGGCCTATGTCCGAATACCGGGCGCACG
TCCTGTACCTGCCGCAGCGTCCGGCTTTCGACGAGGGCCGCGTCCTCGACGTGTTGCGTGCGCCCTTCGGGTTCCGGGTT
CATCAGCAGCGGCGCTTTGAGCAAGCAGCGGCAGGACGGCTGCTCGCTTCCCTTGGGCGGGACGAGGCGTTGCTCTCACG
GGACGCCGCCACCTTGTCCGGTGGGGAGGGCCAGATCACGGCGCTGGTGCGCGCCCTGCTGTTGGGACCATCGGTGCTGC
TCCTCGACGAGGCCACGTCCGCCCTGGACCCCGAAACGGTTGCCCTGGCTGAAACGCTGCTTGGCCACTGGTGTGTCGAA
ACACCGGGACGCGCCCTGATCTGGGTCAGCCACGACCCGGCCCAGCGGCGACGGGTGGCCCAGCGTGAGCTGCCCCTGGT
TCCGGCGGTGGTAGCGTGA

Upstream 100 bases:

>100_bases
TGCTGTTCCAGAAGAGGGTCGCCGCGTGACGCTGCTGGAAGCGTCCGGCCTGACCCGCTGGGTAGGGGACCGGGAACTGT
GGCGGGGCTGGTCATGCGCG

Downstream 100 bases:

>100_bases
GCGTGCCCCTGAGTTTGTGGCAGGTGGCGCTCGCCGCGGCCCTCCTGCTGGTGAACGTCGCTCTATCGTGGCGGCTGCGG
CTCGGTCTTGGACGGGACAT

Product: ABC transporter-related protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 192; Mature: 191

Protein sequence:

>192_residues
MTAGESVAVVGPSGSGKSVLLRTLAGLEVVEAGEVRFQGKPQGAWPMSEYRAHVLYLPQRPAFDEGRVLDVLRAPFGFRV
HQQRRFEQAAAGRLLASLGRDEALLSRDAATLSGGEGQITALVRALLLGPSVLLLDEATSALDPETVALAETLLGHWCVE
TPGRALIWVSHDPAQRRRVAQRELPLVPAVVA

Sequences:

>Translated_192_residues
MTAGESVAVVGPSGSGKSVLLRTLAGLEVVEAGEVRFQGKPQGAWPMSEYRAHVLYLPQRPAFDEGRVLDVLRAPFGFRV
HQQRRFEQAAAGRLLASLGRDEALLSRDAATLSGGEGQITALVRALLLGPSVLLLDEATSALDPETVALAETLLGHWCVE
TPGRALIWVSHDPAQRRRVAQRELPLVPAVVA
>Mature_191_residues
TAGESVAVVGPSGSGKSVLLRTLAGLEVVEAGEVRFQGKPQGAWPMSEYRAHVLYLPQRPAFDEGRVLDVLRAPFGFRVH
QQRRFEQAAAGRLLASLGRDEALLSRDAATLSGGEGQITALVRALLLGPSVLLLDEATSALDPETVALAETLLGHWCVET
PGRALIWVSHDPAQRRRVAQRELPLVPAVVA

Specific function: Unknown

COG id: COG4619

COG function: function code R; ABC-type uncharacterized transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9955963, Length=173, Percent_Identity=32.3699421965318, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI9955968, Length=156, Percent_Identity=32.6923076923077, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI9955966, Length=156, Percent_Identity=32.6923076923077, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI45243524, Length=156, Percent_Identity=32.6923076923077, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI255708477, Length=176, Percent_Identity=29.5454545454545, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI42741659, Length=173, Percent_Identity=32.3699421965318, Blast_Score=68, Evalue=6e-12,
Organism=Homo sapiens, GI148612844, Length=173, Percent_Identity=31.7919075144509, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI9961250, Length=174, Percent_Identity=28.735632183908, Blast_Score=64, Evalue=1e-10,
Organism=Escherichia coli, GI1786698, Length=172, Percent_Identity=35.4651162790698, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI1789891, Length=188, Percent_Identity=30.8510638297872, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1788225, Length=192, Percent_Identity=32.8125, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1788761, Length=184, Percent_Identity=33.695652173913, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786872, Length=177, Percent_Identity=33.3333333333333, Blast_Score=69, Evalue=1e-13,
Organism=Escherichia coli, GI1788506, Length=184, Percent_Identity=34.2391304347826, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787029, Length=191, Percent_Identity=31.413612565445, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790467, Length=185, Percent_Identity=30.2702702702703, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786253, Length=186, Percent_Identity=31.7204301075269, Blast_Score=67, Evalue=6e-13,
Organism=Escherichia coli, GI1787712, Length=182, Percent_Identity=30.7692307692308, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789962, Length=175, Percent_Identity=29.7142857142857, Blast_Score=66, Evalue=1e-12,
Organism=Escherichia coli, GI1786703, Length=174, Percent_Identity=37.9310344827586, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788002, Length=193, Percent_Identity=30.0518134715026, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1787500, Length=193, Percent_Identity=29.0155440414508, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1790534, Length=194, Percent_Identity=29.8969072164948, Blast_Score=63, Evalue=1e-11,
Organism=Escherichia coli, GI1787143, Length=155, Percent_Identity=30.9677419354839, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1788450, Length=181, Percent_Identity=32.0441988950276, Blast_Score=61, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI17567265, Length=177, Percent_Identity=34.4632768361582, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI71992290, Length=177, Percent_Identity=33.3333333333333, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535101, Length=175, Percent_Identity=34.2857142857143, Blast_Score=74, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17567269, Length=175, Percent_Identity=34.2857142857143, Blast_Score=72, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17565938, Length=171, Percent_Identity=28.6549707602339, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17543740, Length=188, Percent_Identity=28.7234042553192, Blast_Score=71, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17533971, Length=174, Percent_Identity=31.6091954022989, Blast_Score=69, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17569143, Length=181, Percent_Identity=29.8342541436464, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=172, Percent_Identity=30.8139534883721, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI193211017, Length=155, Percent_Identity=30.3225806451613, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193211015, Length=155, Percent_Identity=30.3225806451613, Blast_Score=67, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI212646699, Length=159, Percent_Identity=31.4465408805031, Blast_Score=67, Evalue=6e-12,
Organism=Caenorhabditis elegans, GI25146777, Length=156, Percent_Identity=29.4871794871795, Blast_Score=66, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI71996809, Length=155, Percent_Identity=29.6774193548387, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=183, Percent_Identity=29.5081967213115, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=174, Percent_Identity=32.183908045977, Blast_Score=64, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=175, Percent_Identity=29.7142857142857, Blast_Score=64, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=149, Percent_Identity=35.5704697986577, Blast_Score=78, Evalue=7e-16,
Organism=Saccharomyces cerevisiae, GI6322640, Length=145, Percent_Identity=29.6551724137931, Blast_Score=67, Evalue=1e-12,
Organism=Drosophila melanogaster, GI24659289, Length=173, Percent_Identity=32.9479768786127, Blast_Score=74, Evalue=5e-14,
Organism=Drosophila melanogaster, GI21357907, Length=174, Percent_Identity=32.7586206896552, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI281363262, Length=173, Percent_Identity=31.7919075144509, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24653245, Length=173, Percent_Identity=31.7919075144509, Blast_Score=70, Evalue=1e-12,
Organism=Drosophila melanogaster, GI85726357, Length=180, Percent_Identity=31.6666666666667, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI19920532, Length=180, Percent_Identity=30.5555555555556, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI24580930, Length=180, Percent_Identity=30.5555555555556, Blast_Score=67, Evalue=9e-12,
Organism=Drosophila melanogaster, GI17136662, Length=174, Percent_Identity=30.4597701149425, Blast_Score=64, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 20572; Mature: 20441

Theoretical pI: Translated: 6.96; Mature: 6.96

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAGESVAVVGPSGSGKSVLLRTLAGLEVVEAGEVRFQGKPQGAWPMSEYRAHVLYLPQR
CCCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCEEECCCCCCCCCHHHCCEEEEECCCC
PAFDEGRVLDVLRAPFGFRVHQQRRFEQAAAGRLLASLGRDEALLSRDAATLSGGEGQIT
CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCCCHHH
ALVRALLLGPSVLLLDEATSALDPETVALAETLLGHWCVETPGRALIWVSHDPAQRRRVA
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH
QRELPLVPAVVA
HHCCCCCCHHCC
>Mature Secondary Structure 
TAGESVAVVGPSGSGKSVLLRTLAGLEVVEAGEVRFQGKPQGAWPMSEYRAHVLYLPQR
CCCCEEEEECCCCCCHHHHHHHHHCCCEEECCCEEECCCCCCCCCHHHCCEEEEECCCC
PAFDEGRVLDVLRAPFGFRVHQQRRFEQAAAGRLLASLGRDEALLSRDAATLSGGEGQIT
CCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHCCCCCCHHH
ALVRALLLGPSVLLLDEATSALDPETVALAETLLGHWCVETPGRALIWVSHDPAQRRRVA
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHH
QRELPLVPAVVA
HHCCCCCCHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]