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The map label for this gene is ybbM [H]

Identifier: 94972007

GI number: 94972007

Start: 508379

End: 509179

Strand: Direct

Name: ybbM [H]

Synonym: Dgeo_2539

Alternate gene names: 94972007

Gene position: 508379-509179 (Clockwise)

Preceding gene: 94972008

Following gene: 94972006

Centisome position: 88.55

GC content: 68.16

Gene sequence:

>801_bases
GTGAGCGTGCCCCTGAGTTTGTGGCAGGTGGCGCTCGCCGCGGCCCTCCTGCTGGTGAACGTCGCTCTATCGTGGCGGCT
GCGGCTCGGTCTTGGACGGGACATCGTGGTGGCAGGCGTGCGGATGGTGGCGCAGTTGCTGCTGGTCGGGCTGATCCTGG
GGTGGGTGTTCGCCCTCCAGCACCCGCTGCCGGTGGTGGGCATCGGTCTGGTCATGACCCTGCTGGCCGGGCAGGCCGGG
GTGGGGCGGGTCCGGCGGCGCTACGCCCGAATCTACCTCGACAGCTTCATCGCGGTGTTCGGAAGTTCGTTTGTCCTGAC
GGGCCTGACGCTGGCGGGCATCCTGCGGATTCATCCCTGGTTCGAGCCGCAGTACGCGATTCCCATTCTCGGGATGGTGC
TGGGCAATACCCTCACGGGCGTATCGCTGGCCCTCGACCGCTTCACGTCGGACGTCTTCGGGCGGCGCGGTCAGATCGAG
GGGCGGCTGGCACTGGGGGCGACGCGCTGGGAGGCGGCCCACACTGAGGTGGCTTCGGCAGTGCGGACGGGGATGCTGCC
GACGCTGAACAGCATGGCGGTGATGGGCGTCGTAAGCCTGCCGGGCATGATGACGGGGCAGATTCTCGCGGGCGCTTCCC
CAGGGACGGCGGTGCGTTACCAGATCGTGATCATGTTCGTTCTCGCGGCCAGTTCTGCACTGGGGGCCTTGACCGTGGTC
TGGCTGGCCTTCCGGGCACTGTTCGACTCCCGTGACCGCCTGCGGGCCGAACGGCTCAGCGGGCCACAAGGGAACGGATG
A

Upstream 100 bases:

>100_bases
TCGAAACACCGGGACGCGCCCTGATCTGGGTCAGCCACGACCCGGCCCAGCGGCGACGGGTGGCCCAGCGTGAGCTGCCC
CTGGTTCCGGCGGTGGTAGC

Downstream 100 bases:

>100_bases
CGGCCCCCTGGCCCCCTCCGGGCACATGTTCTGGCCCTCCCTGCTGGTAAGCAGAGGTCTTCGCGCTGCTGAAGCCGTAC
CGAGGCGGGTGAGACTGCCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSVPLSLWQVALAAALLLVNVALSWRLRLGLGRDIVVAGVRMVAQLLLVGLILGWVFALQHPLPVVGIGLVMTLLAGQAG
VGRVRRRYARIYLDSFIAVFGSSFVLTGLTLAGILRIHPWFEPQYAIPILGMVLGNTLTGVSLALDRFTSDVFGRRGQIE
GRLALGATRWEAAHTEVASAVRTGMLPTLNSMAVMGVVSLPGMMTGQILAGASPGTAVRYQIVIMFVLAASSALGALTVV
WLAFRALFDSRDRLRAERLSGPQGNG

Sequences:

>Translated_266_residues
MSVPLSLWQVALAAALLLVNVALSWRLRLGLGRDIVVAGVRMVAQLLLVGLILGWVFALQHPLPVVGIGLVMTLLAGQAG
VGRVRRRYARIYLDSFIAVFGSSFVLTGLTLAGILRIHPWFEPQYAIPILGMVLGNTLTGVSLALDRFTSDVFGRRGQIE
GRLALGATRWEAAHTEVASAVRTGMLPTLNSMAVMGVVSLPGMMTGQILAGASPGTAVRYQIVIMFVLAASSALGALTVV
WLAFRALFDSRDRLRAERLSGPQGNG
>Mature_265_residues
SVPLSLWQVALAAALLLVNVALSWRLRLGLGRDIVVAGVRMVAQLLLVGLILGWVFALQHPLPVVGIGLVMTLLAGQAGV
GRVRRRYARIYLDSFIAVFGSSFVLTGLTLAGILRIHPWFEPQYAIPILGMVLGNTLTGVSLALDRFTSDVFGRRGQIEG
RLALGATRWEAAHTEVASAVRTGMLPTLNSMAVMGVVSLPGMMTGQILAGASPGTAVRYQIVIMFVLAASSALGALTVVW
LAFRALFDSRDRLRAERLSGPQGNG

Specific function: Unknown

COG id: COG0390

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0014 family [H]

Homologues:

Organism=Escherichia coli, GI87081746, Length=254, Percent_Identity=33.0708661417323, Blast_Score=140, Evalue=1e-34,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005226 [H]

Pfam domain/function: PF03649 UPF0014 [H]

EC number: NA

Molecular weight: Translated: 28341; Mature: 28210

Theoretical pI: Translated: 12.08; Mature: 12.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVPLSLWQVALAAALLLVNVALSWRLRLGLGRDIVVAGVRMVAQLLLVGLILGWVFALQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
HPLPVVGIGLVMTLLAGQAGVGRVRRRYARIYLDSFIAVFGSSFVLTGLTLAGILRIHPW
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
FEPQYAIPILGMVLGNTLTGVSLALDRFTSDVFGRRGQIEGRLALGATRWEAAHTEVASA
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHH
VRTGMLPTLNSMAVMGVVSLPGMMTGQILAGASPGTAVRYQIVIMFVLAASSALGALTVV
HHHCCCCCHHHHHHHHHHHCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WLAFRALFDSRDRLRAERLSGPQGNG
HHHHHHHHCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SVPLSLWQVALAAALLLVNVALSWRLRLGLGRDIVVAGVRMVAQLLLVGLILGWVFALQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC
HPLPVVGIGLVMTLLAGQAGVGRVRRRYARIYLDSFIAVFGSSFVLTGLTLAGILRIHPW
CCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCC
FEPQYAIPILGMVLGNTLTGVSLALDRFTSDVFGRRGQIEGRLALGATRWEAAHTEVASA
CCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCHHHHHHHHHHHHH
VRTGMLPTLNSMAVMGVVSLPGMMTGQILAGASPGTAVRYQIVIMFVLAASSALGALTVV
HHHCCCCCHHHHHHHHHHHCCCHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
WLAFRALFDSRDRLRAERLSGPQGNG
HHHHHHHHCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]