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The map label for this gene is 94972006

Identifier: 94972006

GI number: 94972006

Start: 509612

End: 510886

Strand: Direct

Name: 94972006

Synonym: Dgeo_2538

Alternate gene names: NA

Gene position: 509612-510886 (Clockwise)

Preceding gene: 94972007

Following gene: 94972005

Centisome position: 88.76

GC content: 63.84

Gene sequence:

>1275_bases
ATGCTCGGAGGCGCACAGGTGCGACGCATCATCGAACTCAAAGCCGCCGGTCACACCGTCAGTGGGATCGCCCGCCAGCT
CGACCTGAGCCGCAACACCGTCAAGAAGTACCTGCGAGAACCAGCCCTCCCTCAACCGAAACCCCGCCCCAAAAAGGGCA
GCAAGCTCGATCCCTACGTTCCCTACCTGAAAGGTCGCATCGAGCAGGGCGTGCTGAGTGCCGTGGTGCTGTTCCGTGAA
GTGCAGGAACGCGGGTACCAGGGGCAGTACACGGTGGTCAAGGACTTTGTCCGCCCATTTCGGCGGACACAAGTGTCCGC
CGCCCGCGTCACGACCCGCTTTGAAACCGCGCCGGGCGAGCAGGCTCAGGTGGACTTCGGACGGTACAGCTACCTGAATC
TGGAAGGGCAGACCCGCTCGATCTGGGCCTTCGTGATGGTGCTGGGCTGGTCCCGTGCGCTGTACGTCGAGTTCATCCGC
AAGGCCGACACCGCCAGCTTCATCCGCTGCCACCTCAATGCGTTCGCCTATTTCGGCGGAATGACCCAGAGCATCCTGTA
CGACAACACCAAACAGGTGGTCTTGGAACGCGACGAAACCGGTCAACCCGTCTGGAACCCCCAGTTCCTGGATTTTTCCT
TGCGGCTGGGCTTTTCCATCCGGCTGTGCCGACCTTACCGGCCCCGGACCAAGGGCAAGGTGGAAAGCGGTGTCGGGTAC
GTCGAGAAGAACTTCTGGCTGGGGGCGAAGTTCGTGGACGATGCCGATCTCAACCGTCAAGCCAGACACTGGCTTGACCA
TGTGGCCAATGTCCGCACCCACGGAACCACCCGTCAAAAGCCCCTGGAGCGACTGGCGCTGGAACGGCCCACCCTGAAAC
CCCTGCCTTCACTGGAGTCTTTGCGGTGTTCGTGCGGGAACCGCGCAAGGTCGGGTGGGACGGGTTCGTGTCGTATGGCG
GGAACTTCTACGGGGTCCCCTGGCGGTACGCCGGGCAGACCGTCGAGGTGCAGGCCGACAACCTGGAAGTGCAGGTGTTC
AGCAGTTCCACCCGGATCGCGGTGCATCCCCGGTCGGCCCAGCGGGGGGCGCGCTTCCTGGTGGAAGCGCAATATGACGG
CCTGCCCGTCCCTGGAGATGATGCCCCGCGCCGCCGGGCCTTGCTGGCGTCCCAGACCGAAGGCTTACCGGAGATGCACG
TCGAGCAGCGTTCGTTGGCGGAGTACGACGCCCTGGTCACCGTCGGCACCACCGTCACGCTGGACGAGGTGCTAG

Upstream 100 bases:

>100_bases
CGATGGCGGGATAAAAATGACCAGGAAGGGCGGAACGGAATTGACCACTCCGAGGTAGGAGACCTCTCCGGCCTACGATT
CGCGAGAATCGGAGGTCTGC

Downstream 100 bases:

>100_bases
CCACCGTGTTCCGGGAGGACGAAGCATGATCGCGGTCGAACGCTGCCGAACGGATCTGGAAGCGTTGGGCTTGCCGCATG
CGGCAAGCCTGCTGGAGAGC

Product: integrase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 424; Mature: 424

Protein sequence:

>424_residues
MLGGAQVRRIIELKAAGHTVSGIARQLDLSRNTVKKYLREPALPQPKPRPKKGSKLDPYVPYLKGRIEQGVLSAVVLFRE
VQERGYQGQYTVVKDFVRPFRRTQVSAARVTTRFETAPGEQAQVDFGRYSYLNLEGQTRSIWAFVMVLGWSRALYVEFIR
KADTASFIRCHLNAFAYFGGMTQSILYDNTKQVVLERDETGQPVWNPQFLDFSLRLGFSIRLCRPYRPRTKGKVESGVGY
VEKNFWLGAKFVDDADLNRQARHWLDHVANVRTHGTTRQKPLERLALERPTLKPLPSLESLRCSCGNRARSGGTGSCRMA
GTSTGSPGGTPGRPSRCRPTTWKCRCSAVPPGSRCIPGRPSGGRASWWKRNMTACPSLEMMPRAAGPCWRPRPKAYRRCT
SSSVRWRSTTPWSPSAPPSRWTRC

Sequences:

>Translated_424_residues
MLGGAQVRRIIELKAAGHTVSGIARQLDLSRNTVKKYLREPALPQPKPRPKKGSKLDPYVPYLKGRIEQGVLSAVVLFRE
VQERGYQGQYTVVKDFVRPFRRTQVSAARVTTRFETAPGEQAQVDFGRYSYLNLEGQTRSIWAFVMVLGWSRALYVEFIR
KADTASFIRCHLNAFAYFGGMTQSILYDNTKQVVLERDETGQPVWNPQFLDFSLRLGFSIRLCRPYRPRTKGKVESGVGY
VEKNFWLGAKFVDDADLNRQARHWLDHVANVRTHGTTRQKPLERLALERPTLKPLPSLESLRCSCGNRARSGGTGSCRMA
GTSTGSPGGTPGRPSRCRPTTWKCRCSAVPPGSRCIPGRPSGGRASWWKRNMTACPSLEMMPRAAGPCWRPRPKAYRRCT
SSSVRWRSTTPWSPSAPPSRWTRC
>Mature_424_residues
MLGGAQVRRIIELKAAGHTVSGIARQLDLSRNTVKKYLREPALPQPKPRPKKGSKLDPYVPYLKGRIEQGVLSAVVLFRE
VQERGYQGQYTVVKDFVRPFRRTQVSAARVTTRFETAPGEQAQVDFGRYSYLNLEGQTRSIWAFVMVLGWSRALYVEFIR
KADTASFIRCHLNAFAYFGGMTQSILYDNTKQVVLERDETGQPVWNPQFLDFSLRLGFSIRLCRPYRPRTKGKVESGVGY
VEKNFWLGAKFVDDADLNRQARHWLDHVANVRTHGTTRQKPLERLALERPTLKPLPSLESLRCSCGNRARSGGTGSCRMA
GTSTGSPGGTPGRPSRCRPTTWKCRCSAVPPGSRCIPGRPSGGRASWWKRNMTACPSLEMMPRAAGPCWRPRPKAYRRCT
SSSVRWRSTTPWSPSAPPSRWTRC

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012287
- InterPro:   IPR017894
- InterPro:   IPR001584
- InterPro:   IPR006120
- InterPro:   IPR012337 [H]

Pfam domain/function: PF02796 HTH_7; PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 47829; Mature: 47829

Theoretical pI: Translated: 11.21; Mature: 11.21

Prosite motif: PS00022 EGF_1 ; PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGGAQVRRIIELKAAGHTVSGIARQLDLSRNTVKKYLREPALPQPKPRPKKGSKLDPYV
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
PYLKGRIEQGVLSAVVLFREVQERGYQGQYTVVKDFVRPFRRTQVSAARVTTRFETAPGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
QAQVDFGRYSYLNLEGQTRSIWAFVMVLGWSRALYVEFIRKADTASFIRCHLNAFAYFGG
CCEEECCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
MTQSILYDNTKQVVLERDETGQPVWNPQFLDFSLRLGFSIRLCRPYRPRTKGKVESGVGY
CHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECEEEEEECCCCCCCCCCHHHCCCE
VEKNFWLGAKFVDDADLNRQARHWLDHVANVRTHGTTRQKPLERLALERPTLKPLPSLES
EECCEEECCEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHH
LRCSCGNRARSGGTGSCRMAGTSTGSPGGTPGRPSRCRPTTWKCRCSAVPPGSRCIPGRP
HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
SGGRASWWKRNMTACPSLEMMPRAAGPCWRPRPKAYRRCTSSSVRWRSTTPWSPSAPPSR
CCCCCHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCHH
WTRC
CCCC
>Mature Secondary Structure
MLGGAQVRRIIELKAAGHTVSGIARQLDLSRNTVKKYLREPALPQPKPRPKKGSKLDPYV
CCCHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
PYLKGRIEQGVLSAVVLFREVQERGYQGQYTVVKDFVRPFRRTQVSAARVTTRFETAPGE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEECCCCC
QAQVDFGRYSYLNLEGQTRSIWAFVMVLGWSRALYVEFIRKADTASFIRCHLNAFAYFGG
CCEEECCCEEEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCC
MTQSILYDNTKQVVLERDETGQPVWNPQFLDFSLRLGFSIRLCRPYRPRTKGKVESGVGY
CHHHHHHCCCEEEEEECCCCCCCCCCCCEEEEEEEECEEEEEECCCCCCCCCCHHHCCCE
VEKNFWLGAKFVDDADLNRQARHWLDHVANVRTHGTTRQKPLERLALERPTLKPLPSLES
EECCEEECCEECCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCHHH
LRCSCGNRARSGGTGSCRMAGTSTGSPGGTPGRPSRCRPTTWKCRCSAVPPGSRCIPGRP
HHHHCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCC
SGGRASWWKRNMTACPSLEMMPRAAGPCWRPRPKAYRRCTSSSVRWRSTTPWSPSAPPSR
CCCCCHHHHCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCCCCHH
WTRC
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8382825 [H]