| Definition | Deinococcus geothermalis DSM 11300 plasmid pDGEO01, complete sequence. |
|---|---|
| Accession | NC_008010 |
| Length | 574,127 |
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The map label for this gene is yfeW [H]
Identifier: 94971974
GI number: 94971974
Start: 544293
End: 545327
Strand: Direct
Name: yfeW [H]
Synonym: Dgeo_2506
Alternate gene names: 94971974
Gene position: 544293-545327 (Clockwise)
Preceding gene: 94971975
Following gene: 94971967
Centisome position: 94.8
GC content: 71.69
Gene sequence:
>1035_bases ATGACACGTAACGGCGTGACCGGAAGGAGGATCATTCCCCCGCGCACTCGCGAGCTGCTCGCGGAGGCGGTGGAGCGCAA GGGCCTGTGCGGCGCGGCGTTGGGCGTCGCCAGTGCAGACGGGCAGCGGGACACGCTGATCCTGGGAAGCGCGGCGTGCG AACCGCGCCGCGTTCCGCTGGAAGAAGACTTCTGGTGGGATCTCGCCAGCCTGACCAAGCCGCTCTTCACCGCGCGGGAG GTGTTGCGTGCAGCGGAAGACGGGCAGCTCGACCTGGACGACCCGCTGTCCAGCCACCTGCCGGACCTCGCCTGGGCGCA GGACACCGCTCTCACATCCCGCACCCTGCGGCAGCTCCTGACCCATACGGCAGGCCTTCCCGCCTGGGCCCCGCTGTACA CTTGGGGCGACGCAGCGACCATCCGCGCCCGCGTGTTGCAGGAAGTCTGGGTGCTGACGCCGCCAGGCGAACTGGTTTAC AGCGATCTGGGCTATATCCTACTGGGCACCGTACTGGAGCGGGTGCGCGGCCTGCCCCTGCGTGACTTCCCGCTGGGCTA CGGCCTGACCTTTGCCCCTGATCCGGCGCACACGGTCGCCACCGAACGCTGCCCCTGGCGCAGGCGGGTGCTGCGGGGCG AGACGCACGACGAGAATGCCTGGGCGCTGGGCGGGGTGGCGGGGCACGCGGGCCTGTTCGGCACCCTAGGGGGCGTGCTG GCGCAGGCGGAAAGCCTCTTGCGGGGGGGCTGGCTCTCGCCCGCCGCGCAGGCCGCCGCGACCCGCCCCGAACTCCCGGG CCGCAGCCTCGCCTTCGTAGGTGCGCAACCGGGCTGGAGCGGGGGCAGCCTCGCCAGCCCGAGCGCCTTCGGACACACCG GCTTCACGGGCACTGGCTTTTGGGTGGACCCCGCACGCGGCCTGGCCTGGGTGCTCCTCACCAACCGCGTGCACCCCTCA CGGCACGGCACCCTGGATATCCAGGGGCTGCGGCGCGCAGTAGGCAATACGCTGCTGGCCGCCTGGCCCGAGTGA
Upstream 100 bases:
>100_bases AAACCGCACTGGTGATGCTGCGCCTGGGCCTCAGTGCCCCCGAGGCCGAGGTCCGACTCCAGGCAGCGGGCGGGCACGCG CGGGTGGCCCTGGGGGAAGG
Downstream 100 bases:
>100_bases TCTCGTTCCGCCTCAGGGATGCCCGGCACGCCTGAGCTTCTGGTAGGTCTCCCCGATTCTCTGAGTGTAGACGTCCCAAT TGAAGTTGAGCCGCGCCCGG
Product: beta-lactamase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 344; Mature: 343
Protein sequence:
>344_residues MTRNGVTGRRIIPPRTRELLAEAVERKGLCGAALGVASADGQRDTLILGSAACEPRRVPLEEDFWWDLASLTKPLFTARE VLRAAEDGQLDLDDPLSSHLPDLAWAQDTALTSRTLRQLLTHTAGLPAWAPLYTWGDAATIRARVLQEVWVLTPPGELVY SDLGYILLGTVLERVRGLPLRDFPLGYGLTFAPDPAHTVATERCPWRRRVLRGETHDENAWALGGVAGHAGLFGTLGGVL AQAESLLRGGWLSPAAQAAATRPELPGRSLAFVGAQPGWSGGSLASPSAFGHTGFTGTGFWVDPARGLAWVLLTNRVHPS RHGTLDIQGLRRAVGNTLLAAWPE
Sequences:
>Translated_344_residues MTRNGVTGRRIIPPRTRELLAEAVERKGLCGAALGVASADGQRDTLILGSAACEPRRVPLEEDFWWDLASLTKPLFTARE VLRAAEDGQLDLDDPLSSHLPDLAWAQDTALTSRTLRQLLTHTAGLPAWAPLYTWGDAATIRARVLQEVWVLTPPGELVY SDLGYILLGTVLERVRGLPLRDFPLGYGLTFAPDPAHTVATERCPWRRRVLRGETHDENAWALGGVAGHAGLFGTLGGVL AQAESLLRGGWLSPAAQAAATRPELPGRSLAFVGAQPGWSGGSLASPSAFGHTGFTGTGFWVDPARGLAWVLLTNRVHPS RHGTLDIQGLRRAVGNTLLAAWPE >Mature_343_residues TRNGVTGRRIIPPRTRELLAEAVERKGLCGAALGVASADGQRDTLILGSAACEPRRVPLEEDFWWDLASLTKPLFTAREV LRAAEDGQLDLDDPLSSHLPDLAWAQDTALTSRTLRQLLTHTAGLPAWAPLYTWGDAATIRARVLQEVWVLTPPGELVYS DLGYILLGTVLERVRGLPLRDFPLGYGLTFAPDPAHTVATERCPWRRRVLRGETHDENAWALGGVAGHAGLFGTLGGVLA QAESLLRGGWLSPAAQAAATRPELPGRSLAFVGAQPGWSGGSLASPSAFGHTGFTGTGFWVDPARGLAWVLLTNRVHPSR HGTLDIQGLRRAVGNTLLAAWPE
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0214 family [H]
Homologues:
Organism=Escherichia coli, GI87082101, Length=303, Percent_Identity=31.023102310231, Blast_Score=105, Evalue=4e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012338 - InterPro: IPR001466 - InterPro: IPR022849 [H]
Pfam domain/function: PF00144 Beta-lactamase [H]
EC number: NA
Molecular weight: Translated: 36965; Mature: 36834
Theoretical pI: Translated: 7.26; Mature: 7.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 0.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRNGVTGRRIIPPRTRELLAEAVERKGLCGAALGVASADGQRDTLILGSAACEPRRVPL CCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCCC EEDFWWDLASLTKPLFTAREVLRAAEDGQLDLDDPLSSHLPDLAWAQDTALTSRTLRQLL CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH THTAGLPAWAPLYTWGDAATIRARVLQEVWVLTPPGELVYSDLGYILLGTVLERVRGLPL HHHCCCCCCCCCEECCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCC RDFPLGYGLTFAPDPAHTVATERCPWRRRVLRGETHDENAWALGGVAGHAGLFGTLGGVL CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHH AQAESLLRGGWLSPAAQAAATRPELPGRSLAFVGAQPGWSGGSLASPSAFGHTGFTGTGF HHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE WVDPARGLAWVLLTNRVHPSRHGTLDIQGLRRAVGNTLLAAWPE EECCCCCEEEEEEECCCCCCCCCCEEHHHHHHHHCCCCEECCCC >Mature Secondary Structure TRNGVTGRRIIPPRTRELLAEAVERKGLCGAALGVASADGQRDTLILGSAACEPRRVPL CCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCEEEEECCCCCCCCCCC EEDFWWDLASLTKPLFTAREVLRAAEDGQLDLDDPLSSHLPDLAWAQDTALTSRTLRQLL CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHH THTAGLPAWAPLYTWGDAATIRARVLQEVWVLTPPGELVYSDLGYILLGTVLERVRGLPL HHHCCCCCCCCCEECCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHCCCCC RDFPLGYGLTFAPDPAHTVATERCPWRRRVLRGETHDENAWALGGVAGHAGLFGTLGGVL CCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHHHH AQAESLLRGGWLSPAAQAAATRPELPGRSLAFVGAQPGWSGGSLASPSAFGHTGFTGTGF HHHHHHHHCCCCCHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCE WVDPARGLAWVLLTNRVHPSRHGTLDIQGLRRAVGNTLLAAWPE EECCCCCEEEEEEECCCCCCCCCCEEHHHHHHHHCCCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]