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The map label for this gene is ompW [C]

Identifier: 94314805

GI number: 94314805

Start: 82528

End: 83265

Strand: Reverse

Name: ompW [C]

Synonym: Rmet_5886

Alternate gene names: 94314805

Gene position: 83265-82528 (Counterclockwise)

Preceding gene: 94314806

Following gene: 94314803

Centisome position: 3.23

GC content: 59.89

Gene sequence:

>738_bases
GTGCTATGTCAAGGTCTGCAAGGGAACCAAGGGACACACTGGGCGCACATTTTCAATGTCCAGTGCTTTCAGACCATGAC
CACTACCCTCTCTCCCCGCCGCAAGACCCTTGTTTCCTCCATCTGCATGGCGCTGACCGCCGCCACGATCGGCGCGCTCT
CGGCACCGGCCGTGGCCGCCGACGAACAGCAGAGCAACTGGATGATCCGCCTGCGCGGCACGTTCCTGAACATGGACAAC
AAGTCCGACCCGGTTGGCGGTGTGGGCGCATCTGATCGGATCAGCGTCAACAACAAGTGGATTCCGGAACTGGACGTTAC
CTACTTCATCGTGCCGAACATTGCCGCTGAACTGGTGCTGACGATCCCGCAAAAGCAGGATGTCCGTCTGGATGGCGCGA
AGATCGGCACGTTCAGCCACCTGCCACCGAGCCTGCTGCTGCAGTACCACTTCATTCCGAATGGCACCTTCCGTCCCTAT
GTTGGCGCTGGTGTGAACGTGACGCGAATCTGGGGCGCGGACATCGCCGGCAACACGCTCGGCCTGGACCGCTGGAGCGT
GGGCCCGGCCCTGCAGGTCGGCATGGACTACAAGGTAACCAAGAACTGGTTCCTCAACGTCGACGTCAAGAAGATCTGGA
TCTCGAGCAACGTCTACGCGAATGGAACAGGCCAGAAGGTATCGAACGTGCAGCTCAATCCGTGGCTGTTCAGCGCCGGT
GTCGGCTATCGCTTCTAA

Upstream 100 bases:

>100_bases
TGTCCGCACAAGCTTGATCGCGGTTTGCACAAAGCTGTAGCGATCTGTCGCGCACAGGCGACGATCAATCCCCCTTTCAA
TAACAGGGTGATTCTTGCTT

Downstream 100 bases:

>100_bases
GCGGCGATTTTTCTCCTCCTTGTCAAACGGCTGAGCTCGCGACGGCTCACTCCGATTCCAGGCGCGCGGTGATACCGCGC
GCTTTTTTTCGTTCAGGAAG

Product: outer membrane protein, OmpW family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MLCQGLQGNQGTHWAHIFNVQCFQTMTTTLSPRRKTLVSSICMALTAATIGALSAPAVAADEQQSNWMIRLRGTFLNMDN
KSDPVGGVGASDRISVNNKWIPELDVTYFIVPNIAAELVLTIPQKQDVRLDGAKIGTFSHLPPSLLLQYHFIPNGTFRPY
VGAGVNVTRIWGADIAGNTLGLDRWSVGPALQVGMDYKVTKNWFLNVDVKKIWISSNVYANGTGQKVSNVQLNPWLFSAG
VGYRF

Sequences:

>Translated_245_residues
MLCQGLQGNQGTHWAHIFNVQCFQTMTTTLSPRRKTLVSSICMALTAATIGALSAPAVAADEQQSNWMIRLRGTFLNMDN
KSDPVGGVGASDRISVNNKWIPELDVTYFIVPNIAAELVLTIPQKQDVRLDGAKIGTFSHLPPSLLLQYHFIPNGTFRPY
VGAGVNVTRIWGADIAGNTLGLDRWSVGPALQVGMDYKVTKNWFLNVDVKKIWISSNVYANGTGQKVSNVQLNPWLFSAG
VGYRF
>Mature_245_residues
MLCQGLQGNQGTHWAHIFNVQCFQTMTTTLSPRRKTLVSSICMALTAATIGALSAPAVAADEQQSNWMIRLRGTFLNMDN
KSDPVGGVGASDRISVNNKWIPELDVTYFIVPNIAAELVLTIPQKQDVRLDGAKIGTFSHLPPSLLLQYHFIPNGTFRPY
VGAGVNVTRIWGADIAGNTLGLDRWSVGPALQVGMDYKVTKNWFLNVDVKKIWISSNVYANGTGQKVSNVQLNPWLFSAG
VGYRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=170, Percent_Identity=36.4705882352941, Blast_Score=93, Evalue=2e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 26870; Mature: 26870

Theoretical pI: Translated: 9.66; Mature: 9.66

Prosite motif: PS00695 ENT_VIR_OMP_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLCQGLQGNQGTHWAHIFNVQCFQTMTTTLSPRRKTLVSSICMALTAATIGALSAPAVAA
CCCCCCCCCCCCEEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
DEQQSNWMIRLRGTFLNMDNKSDPVGGVGASDRISVNNKWIPELDVTYFIVPNIAAELVL
CCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCEEEEE
TIPQKQDVRLDGAKIGTFSHLPPSLLLQYHFIPNGTFRPYVGAGVNVTRIWGADIAGNTL
ECCCCCCEEECCEEECCCCCCCHHHEEEEEECCCCCCCCEECCCCEEEEEECCCCCCCCC
GLDRWSVGPALQVGMDYKVTKNWFLNVDVKKIWISSNVYANGTGQKVSNVQLNPWLFSAG
CCCCCCCCCEEEECCCEEEECEEEEEEEEEEEEEECCEEECCCCCEECEEEECCEEEECC
VGYRF
CCCCC
>Mature Secondary Structure
MLCQGLQGNQGTHWAHIFNVQCFQTMTTTLSPRRKTLVSSICMALTAATIGALSAPAVAA
CCCCCCCCCCCCEEEEEEEEHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEC
DEQQSNWMIRLRGTFLNMDNKSDPVGGVGASDRISVNNKWIPELDVTYFIVPNIAAELVL
CCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEECCCCCCCCCEEEEECCCCCEEEEE
TIPQKQDVRLDGAKIGTFSHLPPSLLLQYHFIPNGTFRPYVGAGVNVTRIWGADIAGNTL
ECCCCCCEEECCEEECCCCCCCHHHEEEEEECCCCCCCCEECCCCEEEEEECCCCCCCCC
GLDRWSVGPALQVGMDYKVTKNWFLNVDVKKIWISSNVYANGTGQKVSNVQLNPWLFSAG
CCCCCCCCCEEEECCCEEEECEEEEEEEEEEEEEECCEEECCCCCEECEEEECCEEEECC
VGYRF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]