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The map label for this gene is ybhD [H]

Identifier: 94314798

GI number: 94314798

Start: 75595

End: 76494

Strand: Reverse

Name: ybhD [H]

Synonym: Rmet_5879

Alternate gene names: 94314798

Gene position: 76494-75595 (Counterclockwise)

Preceding gene: 94314803

Following gene: 94314789

Centisome position: 2.96

GC content: 67.33

Gene sequence:

>900_bases
ATGCTGTCGAACCTGTCGGTCAAGCACCTGCGCGCTTTCGTTGCGCTGGCCACCCATCGCAATTTCACGCGCGCGGCGCA
GGCGTGCCACCTGTCCCAATCGGCATTCAGCGCGTTGATCCAGACGCTCGAGGAACAGGCGGGCTGCCGGCTTTTCGAAC
GCACCACACGACATGTGGACCTGAGCACCGACGGGCGCCGATTCGAGGAGATGGCGCGTCGGCTGCTGGGCGATTTCGAA
GCGGCCTTCGATGATCTGCGCGACCATGCCGAGCGCCGCAAGGGTCGCGTGGCGATCGCTGCGCTACCGTCGCTCGCGGG
CGGCGACCTGCCGCCGTTGCTGGCCAGCTTCCACCAGCAATATCCCGGTATCGCGCTCGAACTGCACGACCAGCTCGCCG
ACGGCTGCATCGAGTTTGTGCGACGTGGACAGGCCGACTTCGCGCTGGCGCCCGCGCCGGCCCAGGACGCCGACCTGCGC
GTCGAAGCGCTGGTGCGCGATAGTTTCCATCTGGTCTGCCCGGCCGATCACCCGCTGGCCGGGAAGCGGCGCGTTACGCC
ACAAGCCCTGGCCGGACTGCCATTTATCCAGCTGTCGCGCACCAGCAGCGTAAGGCAGCACCTCGATGCAGCACTGCATC
CACTCAAGCTGAACGGGGTCATGGAAGTCGAGCACCTGGCTACCGTGGCGGCGCTCGTCGAGGCGGGTCTGGGCGTGTCG
GTCGTGCCAGCGCTGGCGCTATTCCAGTTCCGGCGCGAAGGGCTGGCCATCCGGCCCATGCAAATGCCCACGCTGGTGCG
CGACATCTGCGTGGTACGGCTCAAGGATCGGGGCGATTCGGCGGCGGCAACCGCGATGCTGGATTGCCTGCGCGCGCATT
ACCGGAGCGGCAGGCGCTAG

Upstream 100 bases:

>100_bases
AGGACGGCGAACCCATTCTAGGTCTCGCAGGCTCTCACTAACAAACGGATGATTTGGATTAATCTATCGATAATGCCGAT
AAATCTCCACTACCCGAACC

Downstream 100 bases:

>100_bases
AGCTAGACCTGGAGGATTGGGCTCAGAAGTGGCCGAGGTAGCCGCCATCGACGGCCAGCACCTGCCCTGTCACGTACGAT
GCCGCCGGCGAAGCCAGGAA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVDLSTDGRRFEEMARRLLGDFE
AAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQYPGIALELHDQLADGCIEFVRRGQADFALAPAPAQDADLR
VEALVRDSFHLVCPADHPLAGKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLKLNGVMEVEHLATVAALVEAGLGVS
VVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRSGRR

Sequences:

>Translated_299_residues
MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVDLSTDGRRFEEMARRLLGDFE
AAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQYPGIALELHDQLADGCIEFVRRGQADFALAPAPAQDADLR
VEALVRDSFHLVCPADHPLAGKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLKLNGVMEVEHLATVAALVEAGLGVS
VVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRSGRR
>Mature_299_residues
MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVDLSTDGRRFEEMARRLLGDFE
AAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQYPGIALELHDQLADGCIEFVRRGQADFALAPAPAQDADLR
VEALVRDSFHLVCPADHPLAGKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLKLNGVMEVEHLATVAALVEAGLGVS
VVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRSGRR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693105, Length=276, Percent_Identity=33.695652173913, Blast_Score=159, Evalue=2e-40,
Organism=Escherichia coli, GI1788748, Length=290, Percent_Identity=34.8275862068965, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI157672245, Length=285, Percent_Identity=31.2280701754386, Blast_Score=122, Evalue=2e-29,
Organism=Escherichia coli, GI1789204, Length=263, Percent_Identity=33.4600760456274, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI1790399, Length=275, Percent_Identity=28.7272727272727, Blast_Score=99, Evalue=5e-22,
Organism=Escherichia coli, GI1787530, Length=271, Percent_Identity=26.9372693726937, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1788887, Length=266, Percent_Identity=28.9473684210526, Blast_Score=95, Evalue=5e-21,
Organism=Escherichia coli, GI1787879, Length=314, Percent_Identity=30.5732484076433, Blast_Score=92, Evalue=6e-20,
Organism=Escherichia coli, GI87081904, Length=208, Percent_Identity=30.2884615384615, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787601, Length=187, Percent_Identity=27.807486631016, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788297, Length=242, Percent_Identity=27.2727272727273, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790262, Length=257, Percent_Identity=25.6809338521401, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1790783, Length=286, Percent_Identity=26.9230769230769, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI2367136, Length=261, Percent_Identity=24.5210727969349, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789173, Length=188, Percent_Identity=31.3829787234043, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790208, Length=248, Percent_Identity=26.6129032258064, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788481, Length=239, Percent_Identity=25.9414225941423, Blast_Score=71, Evalue=9e-14,
Organism=Escherichia coli, GI87082184, Length=250, Percent_Identity=24.8, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1787589, Length=122, Percent_Identity=33.6065573770492, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693193, Length=140, Percent_Identity=32.8571428571429, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786401, Length=170, Percent_Identity=25.8823529411765, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1788706, Length=177, Percent_Identity=27.683615819209, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787128, Length=139, Percent_Identity=31.6546762589928, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=228, Percent_Identity=25.4385964912281, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI1787806, Length=244, Percent_Identity=23.3606557377049, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32837; Mature: 32837

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVD
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
LSTDGRRFEEMARRLLGDFEAAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHH
YPGIALELHDQLADGCIEFVRRGQADFALAPAPAQDADLRVEALVRDSFHLVCPADHPLA
CCCEEEHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCEEEECCCCCCCC
GKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLKLNGVMEVEHLATVAALVEAGLGVS
CCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
VVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRSGRR
HHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLSNLSVKHLRAFVALATHRNFTRAAQACHLSQSAFSALIQTLEEQAGCRLFERTTRHVD
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
LSTDGRRFEEMARRLLGDFEAAFDDLRDHAERRKGRVAIAALPSLAGGDLPPLLASFHQQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHH
YPGIALELHDQLADGCIEFVRRGQADFALAPAPAQDADLRVEALVRDSFHLVCPADHPLA
CCCEEEHHHHHHHHHHHHHHHCCCCCEEECCCCCCCCCHHHHHHHHCCEEEECCCCCCCC
GKRRVTPQALAGLPFIQLSRTSSVRQHLDAALHPLKLNGVMEVEHLATVAALVEAGLGVS
CCCCCCHHHHHCCCCEEEHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHH
VVPALALFQFRREGLAIRPMQMPTLVRDICVVRLKDRGDSAAATAMLDCLRAHYRSGRR
HHHHHHHHHHHHCCCEECCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]