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The map label for this gene is yvoA [H]

Identifier: 94314789

GI number: 94314789

Start: 65612

End: 66394

Strand: Reverse

Name: yvoA [H]

Synonym: Rmet_5870

Alternate gene names: 94314789

Gene position: 66394-65612 (Counterclockwise)

Preceding gene: 94314798

Following gene: 94314788

Centisome position: 2.57

GC content: 66.79

Gene sequence:

>783_bases
ATGAGTGAAGCCGTCGTTCCCCTGTATCACCAGATTTACGTGGTGCTCCGCCAGCAGATCGTGGAAGGCCGCTTCGGCCA
GGGCCCGCTGCCAGGCGAAATCGACCTTGCCAAGCAATTTCACGCTTCGCGCGTGACGATGCGGCGCGTGTTCGACCGCC
TGGTTCAGGAAGGCCTGGTCCGCCGCCATCGCGGACTCGGGACGTTCGTGAACCCGCATCCAGTCAGGCCGCAGGTCACC
GAGGAACGCGCCACGAGCCTGCTCGGCGCCATCATCGACATGGGCGAGAAGACCGCGGTCAAGGTCATCTCGATCGACGA
GGTGCACGCCACCCCTGAAGTCGCGGAAGCGCTGCAGATCCAGGTGGGCGATCCCGTGGTCAAGATCGTGCGCGTGCGTC
ACTACCGCAACCGCCCTCTGTCCCACATCACGGTCTACCTGCCGATCGACCTGGGCCGCTCACTGACCCGCAAGGATCTG
GAAAACACGCCGATGCTGCGCCTGCTGGAAGCCGCCGGTGTGGAGCTGGGCCGCGCGTCGCAAGTGCTGACGGCCCGCCT
GGCCGACGTGGTCGTGGCCCCGCTGCTCGACGTGCCCGTTGGCGGCGCGCTGCTGGCCGTGCGCCGCGTGGTGCTCGACA
AGAACGGGCGTCCGGTGCAACTGCTGATGGGCCAGTATCGACCCGACCGCTACGAGTACCGCATGGAACTGTCGCCAATG
GGCGGCGGGGACAGCGCCAACGTGTGGGTGGAGAACGAAACCCGCACGGGCCTGCGCGACTGA

Upstream 100 bases:

>100_bases
TGCTTCGCACGCCGCGAGTGCGTTTGATGCTGGCCGCCATGTCTGATTTAAAGTACATTACACGCGTCTAGGACTTGTCA
GCGCTTACGCAAGGGAAACC

Downstream 100 bases:

>100_bases
CCTGCGGGCGAGGCCGGAACCCACTCCTCGTACCGGCCTCGCGACGAATCAGAATCGGGCGATACTGCGCACTCCACATC
ACAACCGAGGAGCTTTCGTC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 259

Protein sequence:

>260_residues
MSEAVVPLYHQIYVVLRQQIVEGRFGQGPLPGEIDLAKQFHASRVTMRRVFDRLVQEGLVRRHRGLGTFVNPHPVRPQVT
EERATSLLGAIIDMGEKTAVKVISIDEVHATPEVAEALQIQVGDPVVKIVRVRHYRNRPLSHITVYLPIDLGRSLTRKDL
ENTPMLRLLEAAGVELGRASQVLTARLADVVVAPLLDVPVGGALLAVRRVVLDKNGRPVQLLMGQYRPDRYEYRMELSPM
GGGDSANVWVENETRTGLRD

Sequences:

>Translated_260_residues
MSEAVVPLYHQIYVVLRQQIVEGRFGQGPLPGEIDLAKQFHASRVTMRRVFDRLVQEGLVRRHRGLGTFVNPHPVRPQVT
EERATSLLGAIIDMGEKTAVKVISIDEVHATPEVAEALQIQVGDPVVKIVRVRHYRNRPLSHITVYLPIDLGRSLTRKDL
ENTPMLRLLEAAGVELGRASQVLTARLADVVVAPLLDVPVGGALLAVRRVVLDKNGRPVQLLMGQYRPDRYEYRMELSPM
GGGDSANVWVENETRTGLRD
>Mature_259_residues
SEAVVPLYHQIYVVLRQQIVEGRFGQGPLPGEIDLAKQFHASRVTMRRVFDRLVQEGLVRRHRGLGTFVNPHPVRPQVTE
ERATSLLGAIIDMGEKTAVKVISIDEVHATPEVAEALQIQVGDPVVKIVRVRHYRNRPLSHITVYLPIDLGRSLTRKDLE
NTPMLRLLEAAGVELGRASQVLTARLADVVVAPLLDVPVGGALLAVRRVVLDKNGRPVQLLMGQYRPDRYEYRMELSPMG
GGDSANVWVENETRTGLRD

Specific function: Acts as a weak repressor of yflG expression [H]

COG id: COG2188

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790118, Length=189, Percent_Identity=31.2169312169312, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786950, Length=231, Percent_Identity=26.4069264069264, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI87082252, Length=223, Percent_Identity=25.5605381165919, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1790540, Length=232, Percent_Identity=29.7413793103448, Blast_Score=68, Evalue=7e-13,
Organism=Escherichia coli, GI1788418, Length=231, Percent_Identity=24.6753246753247, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 29007; Mature: 28876

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEAVVPLYHQIYVVLRQQIVEGRFGQGPLPGEIDLAKQFHASRVTMRRVFDRLVQEGLV
CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRHRGLGTFVNPHPVRPQVTEERATSLLGAIIDMGEKTAVKVISIDEVHATPEVAEALQI
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCHHHHHHHEE
QVGDPVVKIVRVRHYRNRPLSHITVYLPIDLGRSLTRKDLENTPMLRLLEAAGVELGRAS
ECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCCCHH
QVLTARLADVVVAPLLDVPVGGALLAVRRVVLDKNGRPVQLLMGQYRPDRYEYRMELSPM
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCC
GGGDSANVWVENETRTGLRD
CCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure 
SEAVVPLYHQIYVVLRQQIVEGRFGQGPLPGEIDLAKQFHASRVTMRRVFDRLVQEGLV
CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRHRGLGTFVNPHPVRPQVTEERATSLLGAIIDMGEKTAVKVISIDEVHATPEVAEALQI
HHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHCCCHHHHHHHEE
QVGDPVVKIVRVRHYRNRPLSHITVYLPIDLGRSLTRKDLENTPMLRLLEAAGVELGRAS
ECCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHCCCCHHHHHHHHHCCCCCCHH
QVLTARLADVVVAPLLDVPVGGALLAVRRVVLDKNGRPVQLLMGQYRPDRYEYRMELSPM
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEEEECCC
GGGDSANVWVENETRTGLRD
CCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]