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The map label for this gene is paaJ [C]

Identifier: 94314745

GI number: 94314745

Start: 12907

End: 14091

Strand: Reverse

Name: paaJ [C]

Synonym: Rmet_5826

Alternate gene names: 94314745

Gene position: 14091-12907 (Counterclockwise)

Preceding gene: 94314746

Following gene: 94314744

Centisome position: 0.55

GC content: 67.68

Gene sequence:

>1185_bases
ATGACCAACAAAGTGGTGGTAGCCGGTGTCGGCATGATTCCCTTTACCAAGCCGGGCGCGAGCGACGACTACGGCGTGAT
GGGCGCGCGCGCCGCGAAAGCCGCGCTCGCCGACGCTGGCATCGACTACGCGCTGGTGCAGCAGGCCTACGTAGGCTACG
TGTTCGGCGATTCGACGTCGGGACAGACGGCGATCTACGGTGTCGGCCTGACCGGCATTCCGGTCATCAACGTCAACAAC
AACTGCGCCACGGGATCGACGGCGTTGTATCTGGCCCGGCAGGCCGTGGAGAGTGGCGCGGTGGAATGCGCGATCGCGCT
CGGCTTCGAACAGATGGTGCCCGGCGCGCTGAAGGGCGCGTACACGGACCGCCCCGGCCCGATGGAGCGCTTCGCCCGTG
TGATGAACGACGTCCAGGGCTTCGACGAACAGGCGCCGCGCGCGGCGCAGTTCTTCGGCGGTGCCGGCCGTGCCTACATG
AAGGAATTCGGCATTCGGCCCGAGACCTTCGCGCGTATCTCCGTGAAAGCCCGCCAGCACGCGGCGCGTAATCCGTTCGC
CGTATTCCGCAACACCGTCACGCTGGAAGATGTGATGACCTCCCCGAAGGTGTTCGATCCGCTGACGCGTCTGCAGTGCT
GTCCGCCCACCTGCGGCGCGGCCGCCGCGATCCTGTGCACCGAGGCGTTCGCGCGCAAGCATGGGCTCGACACGCGCGTG
GCCATCGCGGCGCAGGCCATGACCACCGACCGCAACAGCACCTTCGATGAAGGCGACATGCGCAAGGTGGTCGGCTACGA
CATGACGCACGCGGCGGCCACCCAGGTCTACGAACGCGCAGGCATCGGGCCCGGCGACGTCGACGTGGTGGAACTGCACG
ACTGCTTCACCGCGAACGAACTGATCACCTACGAAGGGCTGGGCCTGACGCCCGAAGGCACCGCCGAGAAGTTCATCCTC
GACGGCGACAACACGTACGGTGGCCGCGTGGTGACCAACCCCTCGGGCGGCCTGCTGTCCAAGGGCCACCCGCTCGGCGC
CACGGGACTCGCACAGTGCGCGGAACTGGTCTGGCAACTGCGCGGCGAAGCAGGCGACCGGCAGGTAGCCGGCGCGCGCC
TGGCACTGCAGCACAACCTGGGTCTGGGCGGCGCGTGCGTGGTCACGCTGTACCAGCGCCAGTGA

Upstream 100 bases:

>100_bases
TACTGGCAGGACCAGCCGCGGCAGGTCAGCTGAACCAATCGGGTCGATAGCGAACGACCCCACACCTATCTCCTCGTCAC
AAAAAAAGAAGGAAAGCGCA

Downstream 100 bases:

>100_bases
AGGCCCGCCGAGTATCGACACACAGCACTGAAAACAAGACGACTAGAACGAAGGAGACACGAAGCATGAGCAAACTGACC
AACAAGGTAGCGATCGTATC

Product: lipid-transfer protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MTNKVVVAGVGMIPFTKPGASDDYGVMGARAAKAALADAGIDYALVQQAYVGYVFGDSTSGQTAIYGVGLTGIPVINVNN
NCATGSTALYLARQAVESGAVECAIALGFEQMVPGALKGAYTDRPGPMERFARVMNDVQGFDEQAPRAAQFFGGAGRAYM
KEFGIRPETFARISVKARQHAARNPFAVFRNTVTLEDVMTSPKVFDPLTRLQCCPPTCGAAAAILCTEAFARKHGLDTRV
AIAAQAMTTDRNSTFDEGDMRKVVGYDMTHAAATQVYERAGIGPGDVDVVELHDCFTANELITYEGLGLTPEGTAEKFIL
DGDNTYGGRVVTNPSGGLLSKGHPLGATGLAQCAELVWQLRGEAGDRQVAGARLALQHNLGLGGACVVTLYQRQ

Sequences:

>Translated_394_residues
MTNKVVVAGVGMIPFTKPGASDDYGVMGARAAKAALADAGIDYALVQQAYVGYVFGDSTSGQTAIYGVGLTGIPVINVNN
NCATGSTALYLARQAVESGAVECAIALGFEQMVPGALKGAYTDRPGPMERFARVMNDVQGFDEQAPRAAQFFGGAGRAYM
KEFGIRPETFARISVKARQHAARNPFAVFRNTVTLEDVMTSPKVFDPLTRLQCCPPTCGAAAAILCTEAFARKHGLDTRV
AIAAQAMTTDRNSTFDEGDMRKVVGYDMTHAAATQVYERAGIGPGDVDVVELHDCFTANELITYEGLGLTPEGTAEKFIL
DGDNTYGGRVVTNPSGGLLSKGHPLGATGLAQCAELVWQLRGEAGDRQVAGARLALQHNLGLGGACVVTLYQRQ
>Mature_393_residues
TNKVVVAGVGMIPFTKPGASDDYGVMGARAAKAALADAGIDYALVQQAYVGYVFGDSTSGQTAIYGVGLTGIPVINVNNN
CATGSTALYLARQAVESGAVECAIALGFEQMVPGALKGAYTDRPGPMERFARVMNDVQGFDEQAPRAAQFFGGAGRAYMK
EFGIRPETFARISVKARQHAARNPFAVFRNTVTLEDVMTSPKVFDPLTRLQCCPPTCGAAAAILCTEAFARKHGLDTRVA
IAAQAMTTDRNSTFDEGDMRKVVGYDMTHAAATQVYERAGIGPGDVDVVELHDCFTANELITYEGLGLTPEGTAEKFILD
GDNTYGGRVVTNPSGGLLSKGHPLGATGLAQCAELVWQLRGEAGDRQVAGARLALQHNLGLGGACVVTLYQRQ

Specific function: Thiolytic Cleavage Of Beta-Ketoadipyl-CoA To Succinate And Acetyl-CoA (By Similarity). [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI19923233, Length=393, Percent_Identity=56.7430025445293, Blast_Score=437, Evalue=1e-123,
Organism=Homo sapiens, GI302344760, Length=393, Percent_Identity=52.6717557251908, Blast_Score=396, Evalue=1e-110,
Organism=Homo sapiens, GI302344767, Length=324, Percent_Identity=56.1728395061728, Blast_Score=373, Evalue=1e-103,
Organism=Homo sapiens, GI302344762, Length=392, Percent_Identity=48.9795918367347, Blast_Score=353, Evalue=1e-97,
Organism=Homo sapiens, GI55956775, Length=354, Percent_Identity=44.6327683615819, Blast_Score=281, Evalue=8e-76,
Organism=Caenorhabditis elegans, GI17537653, Length=396, Percent_Identity=44.9494949494949, Blast_Score=331, Evalue=5e-91,
Organism=Drosophila melanogaster, GI24585051, Length=393, Percent_Identity=56.9974554707379, Blast_Score=442, Evalue=1e-124,
Organism=Drosophila melanogaster, GI19921506, Length=393, Percent_Identity=56.9974554707379, Blast_Score=442, Evalue=1e-124,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002155
- InterPro:   IPR016039
- InterPro:   IPR016038
- InterPro:   IPR020617
- InterPro:   IPR020616 [H]

Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]

EC number: 2.3.1.- [C]

Molecular weight: Translated: 41534; Mature: 41402

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: PS00098 THIOLASE_1 ; PS00737 THIOLASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKVVVAGVGMIPFTKPGASDDYGVMGARAAKAALADAGIDYALVQQAYVGYVFGDSTS
CCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHEEEEECCCCC
GQTAIYGVGLTGIPVINVNNNCATGSTALYLARQAVESGAVECAIALGFEQMVPGALKGA
CCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHCCC
YTDRPGPMERFARVMNDVQGFDEQAPRAAQFFGGAGRAYMKEFGIRPETFARISVKARQH
CCCCCCHHHHHHHHHHHHHCCHHCCCHHHHHHCCCCHHHHHHHCCCCCHHHEEEHHHHHH
AARNPFAVFRNTVTLEDVMTSPKVFDPLTRLQCCPPTCGAAAAILCTEAFARKHGLDTRV
CCCCCHHHHHCCEEHHHHHCCCHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
AIAAQAMTTDRNSTFDEGDMRKVVGYDMTHAAATQVYERAGIGPGDVDVVELHDCFTANE
EEEEHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
LITYEGLGLTPEGTAEKFILDGDNTYGGRVVTNPSGGLLSKGHPLGATGLAQCAELVWQL
EEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
RGEAGDRQVAGARLALQHNLGLGGACVVTLYQRQ
HCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECC
>Mature Secondary Structure 
TNKVVVAGVGMIPFTKPGASDDYGVMGARAAKAALADAGIDYALVQQAYVGYVFGDSTS
CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHEEEEECCCCC
GQTAIYGVGLTGIPVINVNNNCATGSTALYLARQAVESGAVECAIALGFEQMVPGALKGA
CCEEEEEECCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEEECHHHHCCHHHCCC
YTDRPGPMERFARVMNDVQGFDEQAPRAAQFFGGAGRAYMKEFGIRPETFARISVKARQH
CCCCCCHHHHHHHHHHHHHCCHHCCCHHHHHHCCCCHHHHHHHCCCCCHHHEEEHHHHHH
AARNPFAVFRNTVTLEDVMTSPKVFDPLTRLQCCPPTCGAAAAILCTEAFARKHGLDTRV
CCCCCHHHHHCCEEHHHHHCCCHHHCHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCHH
AIAAQAMTTDRNSTFDEGDMRKVVGYDMTHAAATQVYERAGIGPGDVDVVELHDCFTANE
EEEEHHHCCCCCCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCC
LITYEGLGLTPEGTAEKFILDGDNTYGGRVVTNPSGGLLSKGHPLGATGLAQCAELVWQL
EEEECCCCCCCCCCCCEEEECCCCCCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHH
RGEAGDRQVAGARLALQHNLGLGGACVVTLYQRQ
HCCCCCCCCCCEEEEEEECCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9371463 [H]