| Definition | Cupriavidus metallidurans CH34 megaplasmid, complete sequence. |
|---|---|
| Accession | NC_007974 |
| Length | 2,580,084 |
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The map label for this gene is cyoB [H]
Identifier: 94314711
GI number: 94314711
Start: 2547505
End: 2549481
Strand: Reverse
Name: cyoB [H]
Synonym: Rmet_5792
Alternate gene names: 94314711
Gene position: 2549481-2547505 (Counterclockwise)
Preceding gene: 94314712
Following gene: 94314710
Centisome position: 98.81
GC content: 61.96
Gene sequence:
>1977_bases ATGTTCGGAAAACTGACTCTCGATGCCATCCCCATGCACGAACCCATCATCATGGGCACGCTGGTGGTGGTACTGCTGGG CGGCGCCGCCCTGTTCGGCGCGATCACGTATCACCGCAAGTGGACCTACCTCTGGCGCGAGTGGATCTGCTCGGTGGACC ACAAGCGCGTTGGCGTGATGTACATCATCATGGCGCTGGTCATGCTGCTGCGCGGCTTTGCCGACGCCATCATGATGCGC ACGCAGCAGGCCATTGCCGTCGGCGAGACCGCCGGTTACCTGCCGCCGCACCACTACGACCAGATCTTCACGGCGCACGG CGTGATCATGATCTTCTTCGTGGCCACGCCGTTCATCCTGGGCTTGATGAACGTGATCGTGCCGCTGCAGATCGGCGCGC GCGACGTGGCCTATCCGTTCGTCAACTCGCTGAGCTTCTGGCTCTCGGCCATTGGCGCGGTGCTGGTGATGATCTCGATG TTCGTTGGCGATTTCGCCGCCACCGGATGGGTGGCCTACCCACCGCTCAGTGGTCTTGAGTACAGTCCGACCGTTGGGGT GGATTACTACATCTGGGCGCTACAGATATCAGGGCTTGGCACCACGCTGACAGGCATCAACTTCATCGTCACGATCCTGC GGATGCGCGCGCCGGGCCTGACGCTGATGAAGATGCCGGTGTTCACGTGGACCGCGCTGATCACGAACATCCTGATCGTC GCGATCTTCCCTGTGCTCACCGCCACGCTGGCGCTGCTTACCGCCGACCGCTATCTGGACATGCATTTCTTCACCAGCGA GCTTGGCGGGAACGCGATGATGTACGTGAACCTGATCTGGATCTGGGGCCACCCCGAGGTCTACGTGCTGATCCTGCCGT GCTTCGGCGCGTTCTCGGAGATCATTGCCACGTTCTCGCGCAAGCCGCTGTTCGGCTACAAGTCGATGGTCTACGCGACG TCGTCGATTGGTGTGCTGTCGTTCTTCGTCTGGCTGCACCACTTCTTCACGATGGGCTCGGGCGCCAGCGTCAACGCGTT CTTCGGCATCATGACGTCGATCATCTCGATTCCGACCGGCGTGAAGCTGTTCAATTGGCTGTTCACGATGTATCGCGGCC GCATCCGCTTCCATTCGTCGACGCTGTGGACCATCGGCTTCATGGTGACGTTCGCGGTGGGCGGCATGACCGGCGTGCTG CTGGCCGTGCCGGGCGCGGACTTCGTGCTGCATAACAGCCTGTTCCTGATCGCCCACTTCCACAACGTGATCATCGGTGG CGTGGTCTTCGGTTGTCTGGCGGCCATGTCGTTCTGGTTCCCGAAGGTGTTCGGCTTCACGCTCAACGAGTTCTGGGGCA AGGTCGCGTTCTGGTGCTGGCTGATCGGCTTCTACCTGGCCTTCATGCCGCTGTACGCGCTGGGCCTGATGGGTATGACC CGCCGCATGAACCACTACACCAACCCCGAGTGGCAGCCGTACCTGATCGTCGCGCTGGTTGGCGCGTGCATCATCGGCGC CGGCATCCTGGCAATCCTGTGGCAGCTCTACGTCAGCGTGCGTGACCGCAACCAGAACCGTGACTTGACCGGCGATCCGT GGGATGGCCGCAGCCTGGAGTGGGCCACCGCCTCGCCCGCGCCGTTCTACAACTTCGCGCACGTGCCGAACATCACGTCG CTGGAGCAGCACTGGGAAGACAAGGATACCGGCCGCGCCTACGCGCAGCCCGCCAGGTACGAGGACATCCATATGCCGCG CAATACATCGGCTGGCTTCCTCGTCTCCGTGTTTGGCCTTGTGTTCTGTTTCGGCTTTGTCTGGCACATCTGGTGGATGG TGGGCTTCGGCCTGGCCGCGATGATCTTCACCTTCATCGCCCGCGCGTATGACCGCGACGTGGACTACTACGTCCCCGCC GCCGAAGTGGAACGCATCGAACGCGCGCGCTTCCAGCAACTGCAAGGCTCCAACTGA
Upstream 100 bases:
>100_bases TCAATACATGGCCAGCAATGGCGACATCTGCCGCGCGGACAGCCCCGAGACGCTGCGCGCCGCTCTGCCGCCGCTGCCCG ACACCGTGGAGCAATAACCC
Downstream 100 bases:
>100_bases TCATGACGACATCCCTGAAACTCCGGGCCGACGCAGCGCCCGGCATCCATGCGCCGGGCCATGCGTCCGACGCCCACGGC CATGACGCTGCCCACGGTCA
Product: cytochrome o ubiquinol oxidase subunit I
Products: NA
Alternate protein names: Cytochrome o subunit 1; Cytochrome o ubiquinol oxidase subunit 1; Oxidase BO(3) subunit 1; Ubiquinol oxidase chain A; Ubiquinol oxidase polypeptide I [H]
Number of amino acids: Translated: 658; Mature: 658
Protein sequence:
>658_residues MFGKLTLDAIPMHEPIIMGTLVVVLLGGAALFGAITYHRKWTYLWREWICSVDHKRVGVMYIIMALVMLLRGFADAIMMR TQQAIAVGETAGYLPPHHYDQIFTAHGVIMIFFVATPFILGLMNVIVPLQIGARDVAYPFVNSLSFWLSAIGAVLVMISM FVGDFAATGWVAYPPLSGLEYSPTVGVDYYIWALQISGLGTTLTGINFIVTILRMRAPGLTLMKMPVFTWTALITNILIV AIFPVLTATLALLTADRYLDMHFFTSELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSEIIATFSRKPLFGYKSMVYAT SSIGVLSFFVWLHHFFTMGSGASVNAFFGIMTSIISIPTGVKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAVGGMTGVL LAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCLAAMSFWFPKVFGFTLNEFWGKVAFWCWLIGFYLAFMPLYALGLMGMT RRMNHYTNPEWQPYLIVALVGACIIGAGILAILWQLYVSVRDRNQNRDLTGDPWDGRSLEWATASPAPFYNFAHVPNITS LEQHWEDKDTGRAYAQPARYEDIHMPRNTSAGFLVSVFGLVFCFGFVWHIWWMVGFGLAAMIFTFIARAYDRDVDYYVPA AEVERIERARFQQLQGSN
Sequences:
>Translated_658_residues MFGKLTLDAIPMHEPIIMGTLVVVLLGGAALFGAITYHRKWTYLWREWICSVDHKRVGVMYIIMALVMLLRGFADAIMMR TQQAIAVGETAGYLPPHHYDQIFTAHGVIMIFFVATPFILGLMNVIVPLQIGARDVAYPFVNSLSFWLSAIGAVLVMISM FVGDFAATGWVAYPPLSGLEYSPTVGVDYYIWALQISGLGTTLTGINFIVTILRMRAPGLTLMKMPVFTWTALITNILIV AIFPVLTATLALLTADRYLDMHFFTSELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSEIIATFSRKPLFGYKSMVYAT SSIGVLSFFVWLHHFFTMGSGASVNAFFGIMTSIISIPTGVKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAVGGMTGVL LAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCLAAMSFWFPKVFGFTLNEFWGKVAFWCWLIGFYLAFMPLYALGLMGMT RRMNHYTNPEWQPYLIVALVGACIIGAGILAILWQLYVSVRDRNQNRDLTGDPWDGRSLEWATASPAPFYNFAHVPNITS LEQHWEDKDTGRAYAQPARYEDIHMPRNTSAGFLVSVFGLVFCFGFVWHIWWMVGFGLAAMIFTFIARAYDRDVDYYVPA AEVERIERARFQQLQGSN >Mature_658_residues MFGKLTLDAIPMHEPIIMGTLVVVLLGGAALFGAITYHRKWTYLWREWICSVDHKRVGVMYIIMALVMLLRGFADAIMMR TQQAIAVGETAGYLPPHHYDQIFTAHGVIMIFFVATPFILGLMNVIVPLQIGARDVAYPFVNSLSFWLSAIGAVLVMISM FVGDFAATGWVAYPPLSGLEYSPTVGVDYYIWALQISGLGTTLTGINFIVTILRMRAPGLTLMKMPVFTWTALITNILIV AIFPVLTATLALLTADRYLDMHFFTSELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSEIIATFSRKPLFGYKSMVYAT SSIGVLSFFVWLHHFFTMGSGASVNAFFGIMTSIISIPTGVKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAVGGMTGVL LAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCLAAMSFWFPKVFGFTLNEFWGKVAFWCWLIGFYLAFMPLYALGLMGMT RRMNHYTNPEWQPYLIVALVGACIIGAGILAILWQLYVSVRDRNQNRDLTGDPWDGRSLEWATASPAPFYNFAHVPNITS LEQHWEDKDTGRAYAQPARYEDIHMPRNTSAGFLVSVFGLVFCFGFVWHIWWMVGFGLAAMIFTFIARAYDRDVDYYVPA AEVERIERARFQQLQGSN
Specific function: Cytochrome o terminal oxidase complex is the component of the aerobic respiratory chain that predominates when cells are grown at high aeration. This ubiquinol oxidase shows proton pump activity across the membrane in addition to the electron transfer [H]
COG id: COG0843
COG function: function code C; Heme/copper-type cytochrome/quinol oxidases, subunit 1
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the heme-copper respiratory oxidase family [H]
Homologues:
Organism=Homo sapiens, GI251831109, Length=515, Percent_Identity=37.8640776699029, Blast_Score=328, Evalue=9e-90, Organism=Escherichia coli, GI1786634, Length=657, Percent_Identity=68.4931506849315, Blast_Score=970, Evalue=0.0, Organism=Saccharomyces cerevisiae, GI6226519, Length=483, Percent_Identity=37.0600414078675, Blast_Score=328, Evalue=2e-90, Organism=Saccharomyces cerevisiae, GI6226524, Length=325, Percent_Identity=40, Blast_Score=243, Evalue=8e-65, Organism=Saccharomyces cerevisiae, GI6226523, Length=247, Percent_Identity=34.412955465587, Blast_Score=134, Evalue=5e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000883 - InterPro: IPR014207 [H]
Pfam domain/function: PF00115 COX1 [H]
EC number: 1.10.3.-
Molecular weight: Translated: 73973; Mature: 73973
Theoretical pI: Translated: 7.94; Mature: 7.94
Prosite motif: PS50855 COX1 ; PS00077 COX1_CUB
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 4.9 %Met (Translated Protein) 5.8 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 4.9 %Met (Mature Protein) 5.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFGKLTLDAIPMHEPIIMGTLVVVLLGGAALFGAITYHRKWTYLWREWICSVDHKRVGVM CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH YIIMALVMLLRGFADAIMMRTQQAIAVGETAGYLPPHHYDQIFTAHGVIMIFFVATPFIL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH GLMNVIVPLQIGARDVAYPFVNSLSFWLSAIGAVLVMISMFVGDFAATGWVAYPPLSGLE HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC YSPTVGVDYYIWALQISGLGTTLTGINFIVTILRMRAPGLTLMKMPVFTWTALITNILIV CCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHH AIFPVLTATLALLTADRYLDMHFFTSELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEHHHHHHH IIATFSRKPLFGYKSMVYATSSIGVLSFFVWLHHFFTMGSGASVNAFFGIMTSIISIPTG HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH VKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAVGGMTGVLLAVPGADFVLHNSLFLIAHF HHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHCHHHHHHHH HNVIIGGVVFGCLAAMSFWFPKVFGFTLNEFWGKVAFWCWLIGFYLAFMPLYALGLMGMT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRMNHYTNPEWQPYLIVALVGACIIGAGILAILWQLYVSVRDRNQNRDLTGDPWDGRSLE HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE WATASPAPFYNFAHVPNITSLEQHWEDKDTGRAYAQPARYEDIHMPRNTSAGFLVSVFGL ECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH VFCFGFVWHIWWMVGFGLAAMIFTFIARAYDRDVDYYVPAAEVERIERARFQQLQGSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure MFGKLTLDAIPMHEPIIMGTLVVVLLGGAALFGAITYHRKWTYLWREWICSVDHKRVGVM CCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH YIIMALVMLLRGFADAIMMRTQQAIAVGETAGYLPPHHYDQIFTAHGVIMIFFVATPFIL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH GLMNVIVPLQIGARDVAYPFVNSLSFWLSAIGAVLVMISMFVGDFAATGWVAYPPLSGLE HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCC YSPTVGVDYYIWALQISGLGTTLTGINFIVTILRMRAPGLTLMKMPVFTWTALITNILIV CCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHH AIFPVLTATLALLTADRYLDMHFFTSELGGNAMMYVNLIWIWGHPEVYVLILPCFGAFSE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEHHHHHHH IIATFSRKPLFGYKSMVYATSSIGVLSFFVWLHHFFTMGSGASVNAFFGIMTSIISIPTG HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH VKLFNWLFTMYRGRIRFHSSTLWTIGFMVTFAVGGMTGVLLAVPGADFVLHNSLFLIAHF HHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHCCHHEEEEECCCCCCHHHCHHHHHHHH HNVIIGGVVFGCLAAMSFWFPKVFGFTLNEFWGKVAFWCWLIGFYLAFMPLYALGLMGMT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH RRMNHYTNPEWQPYLIVALVGACIIGAGILAILWQLYVSVRDRNQNRDLTGDPWDGRSLE HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEE WATASPAPFYNFAHVPNITSLEQHWEDKDTGRAYAQPARYEDIHMPRNTSAGFLVSVFGL ECCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHCCCCCCCCCCCCCCCCCHHHHHHHHH VFCFGFVWHIWWMVGFGLAAMIFTFIARAYDRDVDYYVPAAEVERIERARFQQLQGSN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: Protoheme IX (Heme B55 and B562); Copper B. [C]
Metal ions: Fe; Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Oxidoreductases [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]