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The map label for this gene is ybaO [C]

Identifier: 94314567

GI number: 94314567

Start: 2409330

End: 2409752

Strand: Direct

Name: ybaO [C]

Synonym: Rmet_5648

Alternate gene names: 94314567

Gene position: 2409330-2409752 (Clockwise)

Preceding gene: 94314565

Following gene: 94314569

Centisome position: 93.38

GC content: 64.54

Gene sequence:

>423_bases
ATGGACGATACCGACCGACAACTCATTGCCCTGCTGCGGGATGACGCCCGCACGCCCGTGGTAACGCTTGCCAGGAAGCT
ACGCGTGGCGCGCGCCACGGTGCAGAACCGCCTGGCAAAACTGGAGAGCGAGGGGACGATCGTCGGCTACACGATCCGGT
TGCGGCCCGAGGCCGAGGCGTTCCGCATCCGTGCCATCATGAGCATCGAGATCGAGGGCAACCACAGCGAGGACGTGCGG
CGTGAATTGCGCGGTCACCCGAACGTCGTGGCGCTGCACACCACCAACGGCCGCTGGGACCTGATGGCCGAACTGCGCGC
GGATACGCTGGAGGCATTCGACCGCATCCTCAGTGCCATCCGCCTGATCCCGGGCATCGCCAATACAGAGACCAGCATCC
TGCTTTCGACGCTGAAGCTATAG

Upstream 100 bases:

>100_bases
GCTCACCCGCCATGGCTGAGCCAAATTGCATGCGGACGATGGGCAGAAATTGGTTCTCGCATTACACTTTGCCCAATCAA
TAAGGCAATCCGCCAGATCC

Downstream 100 bases:

>100_bases
GTGCCTGCCAGATCCAACCTCAATCCACTGCCTCGGCAAGCGCTGCGTCGAACATGGCGGCGGTGAGCCCAAGCAGCAGT
GCAATGGCAGACGCGATAAA

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 140; Mature: 140

Protein sequence:

>140_residues
MDDTDRQLIALLRDDARTPVVTLARKLRVARATVQNRLAKLESEGTIVGYTIRLRPEAEAFRIRAIMSIEIEGNHSEDVR
RELRGHPNVVALHTTNGRWDLMAELRADTLEAFDRILSAIRLIPGIANTETSILLSTLKL

Sequences:

>Translated_140_residues
MDDTDRQLIALLRDDARTPVVTLARKLRVARATVQNRLAKLESEGTIVGYTIRLRPEAEAFRIRAIMSIEIEGNHSEDVR
RELRGHPNVVALHTTNGRWDLMAELRADTLEAFDRILSAIRLIPGIANTETSILLSTLKL
>Mature_140_residues
MDDTDRQLIALLRDDARTPVVTLARKLRVARATVQNRLAKLESEGTIVGYTIRLRPEAEAFRIRAIMSIEIEGNHSEDVR
RELRGHPNVVALHTTNGRWDLMAELRADTLEAFDRILSAIRLIPGIANTETSILLSTLKL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 15779; Mature: 15779

Theoretical pI: Translated: 9.22; Mature: 9.22

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDTDRQLIALLRDDARTPVVTLARKLRVARATVQNRLAKLESEGTIVGYTIRLRPEAEA
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHH
FRIRAIMSIEIEGNHSEDVRRELRGHPNVVALHTTNGRWDLMAELRADTLEAFDRILSAI
EEEEEEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
RLIPGIANTETSILLSTLKL
HHCCCCCCCHHHHHHHHHCC
>Mature Secondary Structure
MDDTDRQLIALLRDDARTPVVTLARKLRVARATVQNRLAKLESEGTIVGYTIRLRPEAEA
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCHHH
FRIRAIMSIEIEGNHSEDVRRELRGHPNVVALHTTNGRWDLMAELRADTLEAFDRILSAI
EEEEEEEEEEECCCCCHHHHHHHCCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHH
RLIPGIANTETSILLSTLKL
HHCCCCCCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA