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The map label for this gene is ydfH [H]

Identifier: 94314550

GI number: 94314550

Start: 2387572

End: 2388261

Strand: Direct

Name: ydfH [H]

Synonym: Rmet_5631

Alternate gene names: 94314550

Gene position: 2387572-2388261 (Clockwise)

Preceding gene: 94314543

Following gene: 94314551

Centisome position: 92.54

GC content: 65.94

Gene sequence:

>690_bases
ATGAGCACAAACCCGACCACCCCTTCGCAAGCCGTCGACCGCCAGATCCTGCATGTGGCGGTGGCTCAGCGCCTGCGCAC
GATGATCATGGAGGGCGACCTCGCACCGGGCACGCGGCTCAACGAGCGCGTGCTGTGCGACTTGCTCCAGGTTTCGCGCA
CGCCGCTGCGTGAAGCCTTCAAGGTCCTGGCCGGTGACGGGCTGGTGACGCTGCTGCCGAACCGGGGCGCCGAGGTGGTA
GTGCTGTCGCAGGAGGCGATCAACCACCTGTTCGAGATGATGGGCGCGCTCGAGGCGATGTCCGGCGAGCTGGCCTGCCA
GCGCATCACCGATGCCGAGCTGAACGAGATTCGCGCGCTCCACTACGAAATGCTCGCTTGCCACGCGCGGCGGGACCTGC
CCAATTACTACGCGCTGAACCGCCGCATCCATGACGCGATCAATGCGGCGGCGCGCAATCCGATCCTCGAGGAGACCTAT
CGACGCATCAACCTGCGCATTCAGGCGCTGCGCTTCCGCTCGAACTTCGATCAGGACAAATGGGACATGGCCGTGCGCGA
GCACGGCGAGATGCTCGATGCCTTGTCGAAGCGCGATGGGGCCGCGCTGCGTGACATCCTGCGCGCGCACCTGCAGCACA
AGCACGACGCGCTGATCGCCGAACTAGAACGCGCGCAGGACGCCGCCTGA

Upstream 100 bases:

>100_bases
GACTGCGTTGTTTCTGGCGCAACCTGATGCGCCAAATTGCAGTTCGAGCTTGCCCAAGATTAGGTTTTGAATACAATACT
GTCAAGCCACACGATCCCTG

Downstream 100 bases:

>100_bases
CCTGACGCGACACGCGCACCCGGTGCGCGTCATCGCATGGCCATGACGGCGTCTCCCAGCGCACGCAACCGGAGACATAG
AAGTCCATGGCCTTGCCAAC

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MSTNPTTPSQAVDRQILHVAVAQRLRTMIMEGDLAPGTRLNERVLCDLLQVSRTPLREAFKVLAGDGLVTLLPNRGAEVV
VLSQEAINHLFEMMGALEAMSGELACQRITDAELNEIRALHYEMLACHARRDLPNYYALNRRIHDAINAAARNPILEETY
RRINLRIQALRFRSNFDQDKWDMAVREHGEMLDALSKRDGAALRDILRAHLQHKHDALIAELERAQDAA

Sequences:

>Translated_229_residues
MSTNPTTPSQAVDRQILHVAVAQRLRTMIMEGDLAPGTRLNERVLCDLLQVSRTPLREAFKVLAGDGLVTLLPNRGAEVV
VLSQEAINHLFEMMGALEAMSGELACQRITDAELNEIRALHYEMLACHARRDLPNYYALNRRIHDAINAAARNPILEETY
RRINLRIQALRFRSNFDQDKWDMAVREHGEMLDALSKRDGAALRDILRAHLQHKHDALIAELERAQDAA
>Mature_228_residues
STNPTTPSQAVDRQILHVAVAQRLRTMIMEGDLAPGTRLNERVLCDLLQVSRTPLREAFKVLAGDGLVTLLPNRGAEVVV
LSQEAINHLFEMMGALEAMSGELACQRITDAELNEIRALHYEMLACHARRDLPNYYALNRRIHDAINAAARNPILEETYR
RINLRIQALRFRSNFDQDKWDMAVREHGEMLDALSKRDGAALRDILRAHLQHKHDALIAELERAQDAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=213, Percent_Identity=29.1079812206573, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25918; Mature: 25787

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTNPTTPSQAVDRQILHVAVAQRLRTMIMEGDLAPGTRLNERVLCDLLQVSRTPLREAF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH
KVLAGDGLVTLLPNRGAEVVVLSQEAINHLFEMMGALEAMSGELACQRITDAELNEIRAL
HHHHCCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
HYEMLACHARRDLPNYYALNRRIHDAINAAARNPILEETYRRINLRIQALRFRSNFDQDK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
WDMAVREHGEMLDALSKRDGAALRDILRAHLQHKHDALIAELERAQDAA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
STNPTTPSQAVDRQILHVAVAQRLRTMIMEGDLAPGTRLNERVLCDLLQVSRTPLREAF
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCHHHHHH
KVLAGDGLVTLLPNRGAEVVVLSQEAINHLFEMMGALEAMSGELACQRITDAELNEIRAL
HHHHCCCEEEECCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
HYEMLACHARRDLPNYYALNRRIHDAINAAARNPILEETYRRINLRIQALRFRSNFDQDK
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHH
WDMAVREHGEMLDALSKRDGAALRDILRAHLQHKHDALIAELERAQDAA
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]