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The map label for this gene is yqfA [C]

Identifier: 94314543

GI number: 94314543

Start: 2380202

End: 2380819

Strand: Direct

Name: yqfA [C]

Synonym: Rmet_5624

Alternate gene names: 94314543

Gene position: 2380202-2380819 (Clockwise)

Preceding gene: 291481594

Following gene: 94314550

Centisome position: 92.25

GC content: 63.92

Gene sequence:

>618_bases
ATGTATCGCGGCGAACGGTTCAACGGATATAGCCACCTGGCAGGAGCGGTGCTCTCGGCGGCTGGCATGGCGGTGCTAGT
CACTTCATCGGCACTCCACAGCGACGCCTGGAAGGTCGTCAGCTCCGTCGTCTATGGCACCACGCTGGTGCTGCTCTACA
CGATCTCCACCGTCTACCACAGCGTTCGCGGCCCCGCGAAGGACATCTTCCGCCGCCTCGACTATTGCGCGATCTACCTG
CTGATCGCCGGCAGCTATACCCCGTTCGCATTGGTCACATTACGTGGCCCCTGGGGCTGGACCCTGTTCGGCGTCAACTG
GGGGCTGGCCGTGGCCGGCATCATTCAGGAACTCTGGATCGGCCATCGCACCCGCATCTTCTCGCTGGCCATCTACGTGA
TCATGGGCTGGCTGGTGCTGATCGCGTTCGGCCCGCTGGCGGCGGCCCTGCCGCCCGTGGGGCTGTACTGGCTCGTGGCC
GGCGGCGCCATCTACACTGCCGGCATCGGCTTCTTCCTGTTCGACGAGAAGGTGCGCCACTTCCACGGCATCTGGCACCT
GTTCGTGCTGGGCGGCAGCATGTGCCAGTTCATCAGCATCCTGTTCTACGTCGGGTAA

Upstream 100 bases:

>100_bases
CAAGTGTACATGACCCTGTTGTTTGCGCGGATCGGCCTGCACGCCGGGCGATCCGTGACAGAATGGCCACTTGTCCACAG
CGCGGACGGAGGCATTGGGG

Downstream 100 bases:

>100_bases
GCGCCCGATACCCACCTATATCTCGGTCACGGTCGCCGCCGATGCGGCCGTCTCCGTGACCACGCCGGCTTCGAGCATCG
CCTCGATCTCCGCCTCGCCA

Product: Hemolysin III family protein, channel protein

Products: NA

Alternate protein names: Hemolysin III; Hly-III [H]

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MYRGERFNGYSHLAGAVLSAAGMAVLVTSSALHSDAWKVVSSVVYGTTLVLLYTISTVYHSVRGPAKDIFRRLDYCAIYL
LIAGSYTPFALVTLRGPWGWTLFGVNWGLAVAGIIQELWIGHRTRIFSLAIYVIMGWLVLIAFGPLAAALPPVGLYWLVA
GGAIYTAGIGFFLFDEKVRHFHGIWHLFVLGGSMCQFISILFYVG

Sequences:

>Translated_205_residues
MYRGERFNGYSHLAGAVLSAAGMAVLVTSSALHSDAWKVVSSVVYGTTLVLLYTISTVYHSVRGPAKDIFRRLDYCAIYL
LIAGSYTPFALVTLRGPWGWTLFGVNWGLAVAGIIQELWIGHRTRIFSLAIYVIMGWLVLIAFGPLAAALPPVGLYWLVA
GGAIYTAGIGFFLFDEKVRHFHGIWHLFVLGGSMCQFISILFYVG
>Mature_205_residues
MYRGERFNGYSHLAGAVLSAAGMAVLVTSSALHSDAWKVVSSVVYGTTLVLLYTISTVYHSVRGPAKDIFRRLDYCAIYL
LIAGSYTPFALVTLRGPWGWTLFGVNWGLAVAGIIQELWIGHRTRIFSLAIYVIMGWLVLIAFGPLAAALPPVGLYWLVA
GGAIYTAGIGFFLFDEKVRHFHGIWHLFVLGGSMCQFISILFYVG

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=181, Percent_Identity=30.939226519337, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI52630445, Length=206, Percent_Identity=29.126213592233, Blast_Score=71, Evalue=5e-13,
Organism=Homo sapiens, GI154759277, Length=205, Percent_Identity=27.8048780487805, Blast_Score=71, Evalue=6e-13,
Organism=Escherichia coli, GI1789266, Length=203, Percent_Identity=40.8866995073892, Blast_Score=140, Evalue=6e-35,
Organism=Caenorhabditis elegans, GI71996356, Length=213, Percent_Identity=32.8638497652582, Blast_Score=77, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 22516; Mature: 22516

Theoretical pI: Translated: 9.45; Mature: 9.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYRGERFNGYSHLAGAVLSAAGMAVLVTSSALHSDAWKVVSSVVYGTTLVLLYTISTVYH
CCCCCCCCCHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVRGPAKDIFRRLDYCAIYLLIAGSYTPFALVTLRGPWGWTLFGVNWGLAVAGIIQELWI
HHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHC
GHRTRIFSLAIYVIMGWLVLIAFGPLAAALPPVGLYWLVAGGAIYTAGIGFFLFDEKVRH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FHGIWHLFVLGGSMCQFISILFYVG
HHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MYRGERFNGYSHLAGAVLSAAGMAVLVTSSALHSDAWKVVSSVVYGTTLVLLYTISTVYH
CCCCCCCCCHHHHHHHHHHHCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SVRGPAKDIFRRLDYCAIYLLIAGSYTPFALVTLRGPWGWTLFGVNWGLAVAGIIQELWI
HHCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCEEEEECCHHHHHHHHHHHHHC
GHRTRIFSLAIYVIMGWLVLIAFGPLAAALPPVGLYWLVAGGAIYTAGIGFFLFDEKVRH
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
FHGIWHLFVLGGSMCQFISILFYVG
HHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7495855 [H]