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The map label for this gene is yfdE [H]

Identifier: 94314544

GI number: 94314544

Start: 2380835

End: 2382082

Strand: Reverse

Name: yfdE [H]

Synonym: Rmet_5625

Alternate gene names: 94314544

Gene position: 2382082-2380835 (Counterclockwise)

Preceding gene: 94314545

Following gene: 94314542

Centisome position: 92.33

GC content: 65.95

Gene sequence:

>1248_bases
ATGTCCGATTCCCCTGCAATCGCGCCGGGTGCGTTGTCCGGCCTGCGTGTGCTGGAACTCGCGCAGATCATGGCCGGGCC
CACCTGCGGCATGATGCTGGCCGATCTCGGCGCCGACGTGATCAAGATCGAGAAGATCGATGGTGGCGACGACGCGCGTG
GCTATCGCGAGCCGACCATCAACGGCGTGTCGGCGCCGTTCCTGATGCTGAACCGCAACAAGCGCGGCATCGCCCTTGAC
CTGAAGACACCCGAAGGCCGCGAGGTGTTCCTGCGCATGGTGCGCAACGCCGACGTGGTGATTGAGAACTTCCGCAAGGG
CACGCTGGAGAAGCTCGGGCTTGGCTACGACACGCTGTCGCGCGAGAACCCGGGCCTGATTTATTGCGCGATCTCGGGCT
ATGGCCGCACCGGGCCGTTCGCCGACAAGGGCGGCTTCGATCTGATCGCGCAGGGTTACACGGGGCTTATGAGCATTACG
GGCGAGGAGGGCGGGCCGCCGCTGCGCACCGGGAATTCCATCGCCGATATCAATGCGGGCATCCTGGCGGCGTTCGGCAT
TCTTGCCGCGTATCAGCATCGGCAGAAGACCGGGCGCGGGCAGATCGTGGAAACGTCGCTGATCGAGGCCGGCCTGCAGC
AGCTCTACTGGCACGCGGCGATCCATTTCGCCACGGGCGAGTCGCCGGGGCCGAGCGGGTCGGCGCACGTGCTGGCCACG
CCATACCAGGCATTTCCGACGCAGGACGGCCATATCATCGTTGGCGGCGCGAACGAGAAGAACTGGGCGCGTATCGCACA
GGTTCTCGGACATCCGGAATGGGTCGAAGACCCACGTTTTCGGCGCAACGCCGACCGGATGCGTCATCGCGACACGTTGC
TTCCGGAGATGGCCGGCATCCTGATGACGCGCCCGTCCGCTGACTGGCTGGCGGCATTCGATGCAGCGGGCGTCCCGGCC
GGACCCGTGCATTCGATTGGCGAGGCACTGAACCATCCGCAGACGCTGGCGCGTGGCATGGTGGTACGGCAACAGCACGC
GGAAGCCGGGCCGATCCGGACGCTGGGGCTGCCGATACAGCTATCGGAAACGCCGGCGCAGTACCATCGCCCGTCACCGA
GGCTGGGCGAACATACGCGGACGTTGCTGGCGGAATGTGGTTATGGCGAGGCGGAGATCGAGGCGATGCTCGAAGCCGGC
GTGGTCACGGAGACGGCCGCATCGGCGGCGACCGTGACCGAGATATAG

Upstream 100 bases:

>100_bases
GTTCGACTGTTTCGATACCGAGGATTTCCGCACTGGCTATCGCGCGTTCCTGGCCAAGGAGACGCCGAAGTTCAGCGGTC
GCTAACCTGGGAGCAGACCG

Downstream 100 bases:

>100_bases
GTGGGTATCGGGCGCTTACCCGACGTAGAACAGGATGCTGATGAACTGGCACATGCTGCCGCCCAGCACGAACAGGTGCC
AGATGCCGTGGAAGTGGCGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 415; Mature: 414

Protein sequence:

>415_residues
MSDSPAIAPGALSGLRVLELAQIMAGPTCGMMLADLGADVIKIEKIDGGDDARGYREPTINGVSAPFLMLNRNKRGIALD
LKTPEGREVFLRMVRNADVVIENFRKGTLEKLGLGYDTLSRENPGLIYCAISGYGRTGPFADKGGFDLIAQGYTGLMSIT
GEEGGPPLRTGNSIADINAGILAAFGILAAYQHRQKTGRGQIVETSLIEAGLQQLYWHAAIHFATGESPGPSGSAHVLAT
PYQAFPTQDGHIIVGGANEKNWARIAQVLGHPEWVEDPRFRRNADRMRHRDTLLPEMAGILMTRPSADWLAAFDAAGVPA
GPVHSIGEALNHPQTLARGMVVRQQHAEAGPIRTLGLPIQLSETPAQYHRPSPRLGEHTRTLLAECGYGEAEIEAMLEAG
VVTETAASAATVTEI

Sequences:

>Translated_415_residues
MSDSPAIAPGALSGLRVLELAQIMAGPTCGMMLADLGADVIKIEKIDGGDDARGYREPTINGVSAPFLMLNRNKRGIALD
LKTPEGREVFLRMVRNADVVIENFRKGTLEKLGLGYDTLSRENPGLIYCAISGYGRTGPFADKGGFDLIAQGYTGLMSIT
GEEGGPPLRTGNSIADINAGILAAFGILAAYQHRQKTGRGQIVETSLIEAGLQQLYWHAAIHFATGESPGPSGSAHVLAT
PYQAFPTQDGHIIVGGANEKNWARIAQVLGHPEWVEDPRFRRNADRMRHRDTLLPEMAGILMTRPSADWLAAFDAAGVPA
GPVHSIGEALNHPQTLARGMVVRQQHAEAGPIRTLGLPIQLSETPAQYHRPSPRLGEHTRTLLAECGYGEAEIEAMLEAG
VVTETAASAATVTEI
>Mature_414_residues
SDSPAIAPGALSGLRVLELAQIMAGPTCGMMLADLGADVIKIEKIDGGDDARGYREPTINGVSAPFLMLNRNKRGIALDL
KTPEGREVFLRMVRNADVVIENFRKGTLEKLGLGYDTLSRENPGLIYCAISGYGRTGPFADKGGFDLIAQGYTGLMSITG
EEGGPPLRTGNSIADINAGILAAFGILAAYQHRQKTGRGQIVETSLIEAGLQQLYWHAAIHFATGESPGPSGSAHVLATP
YQAFPTQDGHIIVGGANEKNWARIAQVLGHPEWVEDPRFRRNADRMRHRDTLLPEMAGILMTRPSADWLAAFDAAGVPAG
PVHSIGEALNHPQTLARGMVVRQQHAEAGPIRTLGLPIQLSETPAQYHRPSPRLGEHTRTLLAECGYGEAEIEAMLEAGV
VTETAASAATVTEI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=405, Percent_Identity=35.3086419753086, Blast_Score=279, Evalue=4e-75,
Organism=Homo sapiens, GI300863124, Length=431, Percent_Identity=33.1786542923434, Blast_Score=265, Evalue=8e-71,
Organism=Homo sapiens, GI300863126, Length=404, Percent_Identity=32.4257425742574, Blast_Score=232, Evalue=4e-61,
Organism=Homo sapiens, GI13376042, Length=431, Percent_Identity=30.6264501160093, Blast_Score=224, Evalue=1e-58,
Organism=Homo sapiens, GI42794625, Length=404, Percent_Identity=29.2079207920792, Blast_Score=174, Evalue=2e-43,
Organism=Homo sapiens, GI266456254, Length=403, Percent_Identity=29.2803970223325, Blast_Score=173, Evalue=2e-43,
Organism=Homo sapiens, GI266458393, Length=252, Percent_Identity=34.5238095238095, Blast_Score=143, Evalue=2e-34,
Organism=Homo sapiens, GI266458397, Length=255, Percent_Identity=34.1176470588235, Blast_Score=143, Evalue=3e-34,
Organism=Homo sapiens, GI42822893, Length=138, Percent_Identity=39.8550724637681, Blast_Score=105, Evalue=1e-22,
Organism=Homo sapiens, GI266458395, Length=138, Percent_Identity=39.8550724637681, Blast_Score=104, Evalue=1e-22,
Organism=Escherichia coli, GI87082093, Length=353, Percent_Identity=37.6770538243626, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1788717, Length=408, Percent_Identity=32.1078431372549, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1786222, Length=414, Percent_Identity=25.3623188405797, Blast_Score=107, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI115535051, Length=336, Percent_Identity=29.1666666666667, Blast_Score=127, Evalue=1e-29,
Organism=Caenorhabditis elegans, GI32564160, Length=349, Percent_Identity=28.9398280802292, Blast_Score=126, Evalue=2e-29,
Organism=Drosophila melanogaster, GI24648431, Length=394, Percent_Identity=37.3096446700508, Blast_Score=273, Evalue=1e-73,
Organism=Drosophila melanogaster, GI24585488, Length=336, Percent_Identity=29.7619047619048, Blast_Score=136, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44320; Mature: 44189

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSPAIAPGALSGLRVLELAQIMAGPTCGMMLADLGADVIKIEKIDGGDDARGYREPTI
CCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
NGVSAPFLMLNRNKRGIALDLKTPEGREVFLRMVRNADVVIENFRKGTLEKLGLGYDTLS
CCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCC
RENPGLIYCAISGYGRTGPFADKGGFDLIAQGYTGLMSITGEEGGPPLRTGNSIADINAG
CCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCHHHCCHH
ILAAFGILAAYQHRQKTGRGQIVETSLIEAGLQQLYWHAAIHFATGESPGPSGSAHVLAT
HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEEC
PYQAFPTQDGHIIVGGANEKNWARIAQVLGHPEWVEDPRFRRNADRMRHRDTLLPEMAGI
CHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LMTRPSADWLAAFDAAGVPAGPVHSIGEALNHPQTLARGMVVRQQHAEAGPIRTLGLPIQ
EEECCCCHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCEEE
LSETPAQYHRPSPRLGEHTRTLLAECGYGEAEIEAMLEAGVVTETAASAATVTEI
ECCCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHCCC
>Mature Secondary Structure 
SDSPAIAPGALSGLRVLELAQIMAGPTCGMMLADLGADVIKIEKIDGGDDARGYREPTI
CCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCC
NGVSAPFLMLNRNKRGIALDLKTPEGREVFLRMVRNADVVIENFRKGTLEKLGLGYDTLS
CCCCCCEEEEECCCCCEEEEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHCC
RENPGLIYCAISGYGRTGPFADKGGFDLIAQGYTGLMSITGEEGGPPLRTGNSIADINAG
CCCCCEEEEEEECCCCCCCCCCCCCCCEEECCCCEEEEEECCCCCCCCCCCCCHHHCCHH
ILAAFGILAAYQHRQKTGRGQIVETSLIEAGLQQLYWHAAIHFATGESPGPSGSAHVLAT
HHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCEEEEC
PYQAFPTQDGHIIVGGANEKNWARIAQVLGHPEWVEDPRFRRNADRMRHRDTLLPEMAGI
CHHHCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
LMTRPSADWLAAFDAAGVPAGPVHSIGEALNHPQTLARGMVVRQQHAEAGPIRTLGLPIQ
EEECCCCHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEECCEEE
LSETPAQYHRPSPRLGEHTRTLLAECGYGEAEIEAMLEAGVVTETAASAATVTEI
ECCCCHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]